miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 231741 0.69 0.711412
Target:  5'- -aGUGGCCCCaccUCGGCauGCCGGCGc -3'
miRNA:   3'- ugUACCGGGGca-AGUUGc-CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 230851 0.74 0.424238
Target:  5'- gGC-UGGUCCUGgggaacgggUCGGCGGCCGGuCGGc -3'
miRNA:   3'- -UGuACCGGGGCa--------AGUUGCCGGCC-GCC- -5'
30193 5' -59.7 NC_006273.1 + 230471 0.67 0.841238
Target:  5'- cCAgaaGCCCCGgcgggCGAauCGGCCGGCuGGu -3'
miRNA:   3'- uGUac-CGGGGCaa---GUU--GCCGGCCG-CC- -5'
30193 5' -59.7 NC_006273.1 + 223597 0.7 0.663885
Target:  5'- gACGUGGCUuguucacgUCGUUCGugGGCU-GCGGu -3'
miRNA:   3'- -UGUACCGG--------GGCAAGUugCCGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 221422 0.67 0.841238
Target:  5'- ----cGCCCCGUcCAACGcGCCuGUGGa -3'
miRNA:   3'- uguacCGGGGCAaGUUGC-CGGcCGCC- -5'
30193 5' -59.7 NC_006273.1 + 218191 0.72 0.539679
Target:  5'- cGCGUGGCa-UGggCGGCGGCCgacGGCGGa -3'
miRNA:   3'- -UGUACCGggGCaaGUUGCCGG---CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 214735 0.68 0.783082
Target:  5'- gACGUGGuuCCUCGUUCugcCGgagcaccguggguGCCGGCGGu -3'
miRNA:   3'- -UGUACC--GGGGCAAGuu-GC-------------CGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 208806 0.7 0.635038
Target:  5'- uGCAUGGgCCCaggCGAUGGCggaggagaCGGCGGg -3'
miRNA:   3'- -UGUACCgGGGcaaGUUGCCG--------GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 202555 0.68 0.766388
Target:  5'- aGCGUGGCCggCGU--GGCGGCCGaCGGc -3'
miRNA:   3'- -UGUACCGGg-GCAagUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 196679 0.68 0.792552
Target:  5'- gGCGUGGCgCacg-CAGCGGCCGuaguugucGCGGu -3'
miRNA:   3'- -UGUACCGgGgcaaGUUGCCGGC--------CGCC- -5'
30193 5' -59.7 NC_006273.1 + 196539 0.66 0.848801
Target:  5'- gGCGUGGgcaCCCCGcgcgCGACGcugcugccucaGCCGGCGc -3'
miRNA:   3'- -UGUACC---GGGGCaa--GUUGC-----------CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 196322 0.66 0.863399
Target:  5'- -gGUGGaCCCCGcggccgaccCGACGGUgGGCGa -3'
miRNA:   3'- ugUACC-GGGGCaa-------GUUGCCGgCCGCc -5'
30193 5' -59.7 NC_006273.1 + 193182 0.68 0.757444
Target:  5'- ----cGCugCCCGUUCGGCGGCCGuCGGc -3'
miRNA:   3'- uguacCG--GGGCAAGUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 189045 0.71 0.606171
Target:  5'- cGCGUGGUgggggCCCGgacCGGCGGCguaGGCGGc -3'
miRNA:   3'- -UGUACCG-----GGGCaa-GUUGCCGg--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 188125 1.1 0.00209
Target:  5'- uACAUGGCCCCGUUCAACGGCCGGCGGg -3'
miRNA:   3'- -UGUACCGGGGCAAGUUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 187196 0.67 0.817566
Target:  5'- ---cGGCCCuCGggguGCGGgUGGCGGg -3'
miRNA:   3'- uguaCCGGG-GCaaguUGCCgGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 186315 0.68 0.748403
Target:  5'- -----aCCaCCGuUUCAGCGGCCGGCGu -3'
miRNA:   3'- uguaccGG-GGC-AAGUUGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 185596 0.71 0.625409
Target:  5'- uGCAUGGCCgcuaccacaUCGggUgggAGCGGCCcGGCGGa -3'
miRNA:   3'- -UGUACCGG---------GGCaaG---UUGCCGG-CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 184398 0.71 0.587002
Target:  5'- -aGUGGCCCagggagacauccCGgugUCuauguCGGCCGGCGGu -3'
miRNA:   3'- ugUACCGGG------------GCa--AGuu---GCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 179269 0.66 0.863399
Target:  5'- ---cGGCCCguUUCGACGaaauCCGGCGGc -3'
miRNA:   3'- uguaCCGGGgcAAGUUGCc---GGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.