Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30193 | 5' | -59.7 | NC_006273.1 | + | 126990 | 0.68 | 0.748403 |
Target: 5'- gACGUGGagaCCGcggUGGCGGCCGGCa- -3' miRNA: 3'- -UGUACCgg-GGCaa-GUUGCCGGCCGcc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 223597 | 0.7 | 0.663885 |
Target: 5'- gACGUGGCUuguucacgUCGUUCGugGGCU-GCGGu -3' miRNA: 3'- -UGUACCGG--------GGCAAGUugCCGGcCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 41356 | 0.7 | 0.663885 |
Target: 5'- ---gGGCCCacgcgCGUUCGcGCGGCCaguuGGCGGg -3' miRNA: 3'- uguaCCGGG-----GCAAGU-UGCCGG----CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 64243 | 0.7 | 0.670594 |
Target: 5'- gACcUGGCCCgCGggCAcgggcguugcggcgGCGGCCGaaGCGGa -3' miRNA: 3'- -UGuACCGGG-GCaaGU--------------UGCCGGC--CGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 148673 | 0.69 | 0.720768 |
Target: 5'- uCGUGGUgcggccugCCCGacaUCGugGGCCGGcCGGc -3' miRNA: 3'- uGUACCG--------GGGCa--AGUugCCGGCC-GCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 37280 | 0.69 | 0.728206 |
Target: 5'- cCGUGGCCgCCGagcagcccuugCGACGGCCGGacaugcCGGc -3' miRNA: 3'- uGUACCGG-GGCaa---------GUUGCCGGCC------GCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 119018 | 0.69 | 0.730058 |
Target: 5'- aACAUGGCUUCGgaCAggGgGGUCGGCGu -3' miRNA: 3'- -UGUACCGGGGCaaGU--UgCCGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 84840 | 0.68 | 0.748403 |
Target: 5'- ---aGGCaCCCGa--GACGGCCgcGGCGGc -3' miRNA: 3'- uguaCCG-GGGCaagUUGCCGG--CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 94490 | 0.68 | 0.748403 |
Target: 5'- cGCAccggGGUCCCGguucccgUCcGCGGCCcGGgGGg -3' miRNA: 3'- -UGUa---CCGGGGCa------AGuUGCCGG-CCgCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 112553 | 0.7 | 0.644665 |
Target: 5'- gACGcGGUCgCCGcgUCAGCGGCCGcCGGu -3' miRNA: 3'- -UGUaCCGG-GGCa-AGUUGCCGGCcGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 94123 | 0.7 | 0.635038 |
Target: 5'- aGCGcGaGCCCCGUgccgggCAugGGUcgCGGCGGu -3' miRNA: 3'- -UGUaC-CGGGGCAa-----GUugCCG--GCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 185596 | 0.71 | 0.625409 |
Target: 5'- uGCAUGGCCgcuaccacaUCGggUgggAGCGGCCcGGCGGa -3' miRNA: 3'- -UGUACCGG---------GGCaaG---UUGCCGG-CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 116851 | 0.75 | 0.368486 |
Target: 5'- cACGUGGCUuuGUgcagCGugGGUCGGCGu -3' miRNA: 3'- -UGUACCGGggCAa---GUugCCGGCCGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 120568 | 0.73 | 0.493716 |
Target: 5'- uGCAUGGCCCgGgcaaGGCGucuuGCCGGUGGc -3' miRNA: 3'- -UGUACCGGGgCaag-UUGC----CGGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 33231 | 0.72 | 0.530359 |
Target: 5'- cGCAccgagGGCCCCGg--GGCGGCgacgaCGGCGGg -3' miRNA: 3'- -UGUa----CCGGGGCaagUUGCCG-----GCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 218191 | 0.72 | 0.539679 |
Target: 5'- cGCGUGGCa-UGggCGGCGGCCgacGGCGGa -3' miRNA: 3'- -UGUACCGggGCaaGUUGCCGG---CCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 167204 | 0.72 | 0.558478 |
Target: 5'- ---aGGCCggCGUaaacagcgUCAGCGGCCGGUGGu -3' miRNA: 3'- uguaCCGGg-GCA--------AGUUGCCGGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 114181 | 0.71 | 0.584135 |
Target: 5'- cACAUGGgCCCGUUCGAaggcuacucuauguCGGCCGaucGCGc -3' miRNA: 3'- -UGUACCgGGGCAAGUU--------------GCCGGC---CGCc -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 184398 | 0.71 | 0.587002 |
Target: 5'- -aGUGGCCCagggagacauccCGgugUCuauguCGGCCGGCGGu -3' miRNA: 3'- ugUACCGGG------------GCa--AGuu---GCCGGCCGCC- -5' |
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30193 | 5' | -59.7 | NC_006273.1 | + | 189045 | 0.71 | 0.606171 |
Target: 5'- cGCGUGGUgggggCCCGgacCGGCGGCguaGGCGGc -3' miRNA: 3'- -UGUACCG-----GGGCaa-GUUGCCGg--CCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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