miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30193 5' -59.7 NC_006273.1 + 230851 0.74 0.424238
Target:  5'- gGC-UGGUCCUGgggaacgggUCGGCGGCCGGuCGGc -3'
miRNA:   3'- -UGuACCGGGGCa--------AGUUGCCGGCC-GCC- -5'
30193 5' -59.7 NC_006273.1 + 214735 0.68 0.783082
Target:  5'- gACGUGGuuCCUCGUUCugcCGgagcaccguggguGCCGGCGGu -3'
miRNA:   3'- -UGUACC--GGGGCAAGuu-GC-------------CGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 132546 0.67 0.809368
Target:  5'- aGCGUG--CCCGUggacGCGGCCGGCGc -3'
miRNA:   3'- -UGUACcgGGGCAagu-UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 179269 0.66 0.863399
Target:  5'- ---cGGCCCguUUCGACGaaauCCGGCGGc -3'
miRNA:   3'- uguaCCGGGgcAAGUUGCc---GGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 145552 0.72 0.521099
Target:  5'- gACggGGUUCCGggCGGCGGUgcUGGCGGg -3'
miRNA:   3'- -UGuaCCGGGGCaaGUUGCCG--GCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 25446 0.71 0.596575
Target:  5'- cUAUGGCgCCGUggguuggCAGCuGGCCGGCu- -3'
miRNA:   3'- uGUACCGgGGCAa------GUUG-CCGGCCGcc -5'
30193 5' -59.7 NC_006273.1 + 145600 0.7 0.635038
Target:  5'- aGCggGGgCCCGagCGACGGUCugGGCGGc -3'
miRNA:   3'- -UGuaCCgGGGCaaGUUGCCGG--CCGCC- -5'
30193 5' -59.7 NC_006273.1 + 173432 0.7 0.673465
Target:  5'- aGCGUGGCCCCGUUgugguagAACGGCaacCGGu -3'
miRNA:   3'- -UGUACCGGGGCAAg------UUGCCGgccGCC- -5'
30193 5' -59.7 NC_006273.1 + 76622 0.69 0.729132
Target:  5'- cCGUGGCC-------GCGGCCGGCGGc -3'
miRNA:   3'- uGUACCGGggcaaguUGCCGGCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 88557 0.68 0.775225
Target:  5'- cCAUGGCCCUGUgcuACGGCUu-CGGa -3'
miRNA:   3'- uGUACCGGGGCAaguUGCCGGccGCC- -5'
30193 5' -59.7 NC_006273.1 + 186315 0.68 0.748403
Target:  5'- -----aCCaCCGuUUCAGCGGCCGGCGu -3'
miRNA:   3'- uguaccGG-GGC-AAGUUGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 231741 0.69 0.711412
Target:  5'- -aGUGGCCCCaccUCGGCauGCCGGCGc -3'
miRNA:   3'- ugUACCGGGGca-AGUUGc-CGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 129306 0.74 0.44107
Target:  5'- --cUGGCuCCCGggUAccGCGGCCGGCGu -3'
miRNA:   3'- uguACCG-GGGCaaGU--UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 193182 0.68 0.757444
Target:  5'- ----cGCugCCCGUUCGGCGGCCGuCGGc -3'
miRNA:   3'- uguacCG--GGGCAAGUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 140759 0.73 0.484734
Target:  5'- cCcgGGUCCCGUccguUCcGCGGCgGGUGGa -3'
miRNA:   3'- uGuaCCGGGGCA----AGuUGCCGgCCGCC- -5'
30193 5' -59.7 NC_006273.1 + 101158 0.69 0.692528
Target:  5'- cGCAaGGCCUCGggCAcgggcgugGCGGCCGuaGGc -3'
miRNA:   3'- -UGUaCCGGGGCaaGU--------UGCCGGCcgCC- -5'
30193 5' -59.7 NC_006273.1 + 202555 0.68 0.766388
Target:  5'- aGCGUGGCCggCGU--GGCGGCCGaCGGc -3'
miRNA:   3'- -UGUACCGGg-GCAagUUGCCGGCcGCC- -5'
30193 5' -59.7 NC_006273.1 + 196679 0.68 0.792552
Target:  5'- gGCGUGGCgCacg-CAGCGGCCGuaguugucGCGGu -3'
miRNA:   3'- -UGUACCGgGgcaaGUUGCCGGC--------CGCC- -5'
30193 5' -59.7 NC_006273.1 + 19408 0.73 0.493716
Target:  5'- ---aGGCCUgGUUaCAgcGCGGCCGGCGa -3'
miRNA:   3'- uguaCCGGGgCAA-GU--UGCCGGCCGCc -5'
30193 5' -59.7 NC_006273.1 + 208806 0.7 0.635038
Target:  5'- uGCAUGGgCCCaggCGAUGGCggaggagaCGGCGGg -3'
miRNA:   3'- -UGUACCgGGGcaaGUUGCCG--------GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.