miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 3' -51.7 NC_006273.1 + 30723 0.66 0.99757
Target:  5'- gUCCAccuGUUCCUucuucuggcacUGGUGUCUGAUCg -3'
miRNA:   3'- aAGGUucuCAAGGA-----------GCUACAGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 94993 0.66 0.99757
Target:  5'- cUCCGguuGGGcUCCccuccccccucUCGAggGUCCGGCCg -3'
miRNA:   3'- aAGGUu--CUCaAGG-----------AGCUa-CAGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 49958 0.66 0.996471
Target:  5'- --gCGAGAGUUCCUgCGcgGUgcugguccaccacgUCGGCCg -3'
miRNA:   3'- aagGUUCUCAAGGA-GCuaCA--------------GGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 111486 0.66 0.996065
Target:  5'- aUCCAGuuGcaCCUCGAccUCCGACCc -3'
miRNA:   3'- aAGGUUcuCaaGGAGCUacAGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 154415 0.66 0.995418
Target:  5'- -aCCAGGAGcUCUgCGAgcUGgCCGACCc -3'
miRNA:   3'- aaGGUUCUCaAGGaGCU--ACaGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 13932 0.68 0.989509
Target:  5'- aUCCAcuuggAGAGcUCC-CGcgGUCCGAUUg -3'
miRNA:   3'- aAGGU-----UCUCaAGGaGCuaCAGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 102114 0.68 0.989509
Target:  5'- -cCCGAGAcGgcggcaUCCUCGGgcuuUCCGGCCa -3'
miRNA:   3'- aaGGUUCU-Ca-----AGGAGCUac--AGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 168040 0.68 0.988111
Target:  5'- cUCguAGAGUUCCguuaccUGAgGUCCGACg -3'
miRNA:   3'- aAGguUCUCAAGGa-----GCUaCAGGCUGg -5'
30194 3' -51.7 NC_006273.1 + 204883 0.68 0.982654
Target:  5'- -cCCGAGAGgugacggagcgCCUCacgucaguauGAUGUCCGAUCc -3'
miRNA:   3'- aaGGUUCUCaa---------GGAG----------CUACAGGCUGG- -5'
30194 3' -51.7 NC_006273.1 + 81580 0.69 0.981034
Target:  5'- cUCCGAGAGgUCCUCGcagGcggCGGCCg -3'
miRNA:   3'- aAGGUUCUCaAGGAGCua-Cag-GCUGG- -5'
30194 3' -51.7 NC_006273.1 + 52655 0.7 0.958143
Target:  5'- gUCCAuGGGGUUcaCCUCGGgcGUCCGAgCCu -3'
miRNA:   3'- aAGGU-UCUCAA--GGAGCUa-CAGGCU-GG- -5'
30194 3' -51.7 NC_006273.1 + 74104 0.7 0.954333
Target:  5'- -gCCGAGGGcuugaucUCCUCGAUGUCCuuGAgCg -3'
miRNA:   3'- aaGGUUCUCa------AGGAGCUACAGG--CUgG- -5'
30194 3' -51.7 NC_006273.1 + 41135 0.71 0.946026
Target:  5'- gUCCgAGGAGUcgucgucuuccUCCUCGcUGUCuuCGACCg -3'
miRNA:   3'- aAGG-UUCUCA-----------AGGAGCuACAG--GCUGG- -5'
30194 3' -51.7 NC_006273.1 + 70165 0.73 0.890289
Target:  5'- -gCCGAGAccuacgCCUCGGUGUCCGAa- -3'
miRNA:   3'- aaGGUUCUcaa---GGAGCUACAGGCUgg -5'
30194 3' -51.7 NC_006273.1 + 188707 1.11 0.008886
Target:  5'- uUUCCAAGAGUUCCUCGAUGUCCGACCa -3'
miRNA:   3'- -AAGGUUCUCAAGGAGCUACAGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.