Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30194 | 3' | -51.7 | NC_006273.1 | + | 188707 | 1.11 | 0.008886 |
Target: 5'- uUUCCAAGAGUUCCUCGAUGUCCGACCa -3' miRNA: 3'- -AAGGUUCUCAAGGAGCUACAGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 70165 | 0.73 | 0.890289 |
Target: 5'- -gCCGAGAccuacgCCUCGGUGUCCGAa- -3' miRNA: 3'- aaGGUUCUcaa---GGAGCUACAGGCUgg -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 41135 | 0.71 | 0.946026 |
Target: 5'- gUCCgAGGAGUcgucgucuuccUCCUCGcUGUCuuCGACCg -3' miRNA: 3'- aAGG-UUCUCA-----------AGGAGCuACAG--GCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 74104 | 0.7 | 0.954333 |
Target: 5'- -gCCGAGGGcuugaucUCCUCGAUGUCCuuGAgCg -3' miRNA: 3'- aaGGUUCUCa------AGGAGCUACAGG--CUgG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 52655 | 0.7 | 0.958143 |
Target: 5'- gUCCAuGGGGUUcaCCUCGGgcGUCCGAgCCu -3' miRNA: 3'- aAGGU-UCUCAA--GGAGCUa-CAGGCU-GG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 81580 | 0.69 | 0.981034 |
Target: 5'- cUCCGAGAGgUCCUCGcagGcggCGGCCg -3' miRNA: 3'- aAGGUUCUCaAGGAGCua-Cag-GCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 204883 | 0.68 | 0.982654 |
Target: 5'- -cCCGAGAGgugacggagcgCCUCacgucaguauGAUGUCCGAUCc -3' miRNA: 3'- aaGGUUCUCaa---------GGAG----------CUACAGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 168040 | 0.68 | 0.988111 |
Target: 5'- cUCguAGAGUUCCguuaccUGAgGUCCGACg -3' miRNA: 3'- aAGguUCUCAAGGa-----GCUaCAGGCUGg -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 102114 | 0.68 | 0.989509 |
Target: 5'- -cCCGAGAcGgcggcaUCCUCGGgcuuUCCGGCCa -3' miRNA: 3'- aaGGUUCU-Ca-----AGGAGCUac--AGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 13932 | 0.68 | 0.989509 |
Target: 5'- aUCCAcuuggAGAGcUCC-CGcgGUCCGAUUg -3' miRNA: 3'- aAGGU-----UCUCaAGGaGCuaCAGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 154415 | 0.66 | 0.995418 |
Target: 5'- -aCCAGGAGcUCUgCGAgcUGgCCGACCc -3' miRNA: 3'- aaGGUUCUCaAGGaGCU--ACaGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 111486 | 0.66 | 0.996065 |
Target: 5'- aUCCAGuuGcaCCUCGAccUCCGACCc -3' miRNA: 3'- aAGGUUcuCaaGGAGCUacAGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 49958 | 0.66 | 0.996471 |
Target: 5'- --gCGAGAGUUCCUgCGcgGUgcugguccaccacgUCGGCCg -3' miRNA: 3'- aagGUUCUCAAGGA-GCuaCA--------------GGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 94993 | 0.66 | 0.99757 |
Target: 5'- cUCCGguuGGGcUCCccuccccccucUCGAggGUCCGGCCg -3' miRNA: 3'- aAGGUu--CUCaAGG-----------AGCUa-CAGGCUGG- -5' |
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30194 | 3' | -51.7 | NC_006273.1 | + | 30723 | 0.66 | 0.99757 |
Target: 5'- gUCCAccuGUUCCUucuucuggcacUGGUGUCUGAUCg -3' miRNA: 3'- aAGGUucuCAAGGA-----------GCUACAGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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