miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 96048 0.65 0.992151
Target:  5'- aGGGGCgAGucgcgggcaccgcCUCGGuacccccuGGCCGAgGCGAg -3'
miRNA:   3'- gCCCCGaUU-------------GAGCCu-------UUGGCUgUGCU- -5'
30194 5' -53.8 NC_006273.1 + 99175 0.66 0.991512
Target:  5'- gGGGGCcgucauuaaCGGAAACCguguaugggguccgGACACGAa -3'
miRNA:   3'- gCCCCGauuga----GCCUUUGG--------------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 215045 0.66 0.991177
Target:  5'- uGGGcGCUGccggGCUCGGAa---GGCAUGAa -3'
miRNA:   3'- gCCC-CGAU----UGAGCCUuuggCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 43423 0.66 0.991177
Target:  5'- gGGGGUaguuUAAUagCGGAGGCgGAUACGc -3'
miRNA:   3'- gCCCCG----AUUGa-GCCUUUGgCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 61685 0.66 0.990715
Target:  5'- gCGGaGGCguuaaauaccgugAGCcaaUUGGAGAUCGGCGCGGu -3'
miRNA:   3'- -GCC-CCGa------------UUG---AGCCUUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 1280 0.66 0.989986
Target:  5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3'
miRNA:   3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 189359 0.66 0.989986
Target:  5'- -cGGGCUuuuGCUCGuGAGgCGGCACGc -3'
miRNA:   3'- gcCCCGAu--UGAGCcUUUgGCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 182837 0.66 0.989986
Target:  5'- aCGGcGGCgacgAGCUCGGcuGCUGcaGCACa- -3'
miRNA:   3'- -GCC-CCGa---UUGAGCCuuUGGC--UGUGcu -5'
30194 5' -53.8 NC_006273.1 + 196173 0.66 0.989986
Target:  5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3'
miRNA:   3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 140427 0.66 0.988672
Target:  5'- aGGGaGCcgccgcgaGACcCGGAAGCCGuCGCGGu -3'
miRNA:   3'- gCCC-CGa-------UUGaGCCUUUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 154610 0.66 0.988672
Target:  5'- cCGGGGCUGcACuUCGGAGGgUGugAUc- -3'
miRNA:   3'- -GCCCCGAU-UG-AGCCUUUgGCugUGcu -5'
30194 5' -53.8 NC_006273.1 + 41191 0.66 0.987228
Target:  5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3'
miRNA:   3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 87443 0.66 0.987228
Target:  5'- aCGGGG---GCUCGGAgauGACCGGCu--- -3'
miRNA:   3'- -GCCCCgauUGAGCCU---UUGGCUGugcu -5'
30194 5' -53.8 NC_006273.1 + 1253 0.66 0.987228
Target:  5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3'
miRNA:   3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 144071 0.66 0.987228
Target:  5'- gCGGGGCUcACggUGGAGGCgGAUuuCGGc -3'
miRNA:   3'- -GCCCCGAuUGa-GCCUUUGgCUGu-GCU- -5'
30194 5' -53.8 NC_006273.1 + 41473 0.66 0.985646
Target:  5'- uCGGGGCcggagCGGggGCCGugGaagGAu -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCugUg--CU- -5'
30194 5' -53.8 NC_006273.1 + 119711 0.66 0.985646
Target:  5'- -aGGGCgucuaccAGCgucagCGGGAuggcGCCGGCGCGAa -3'
miRNA:   3'- gcCCCGa------UUGa----GCCUU----UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 167185 0.67 0.983918
Target:  5'- gCGGGcGC-AGCggccgCGGAGGCCGGCGu-- -3'
miRNA:   3'- -GCCC-CGaUUGa----GCCUUUGGCUGUgcu -5'
30194 5' -53.8 NC_006273.1 + 87492 0.67 0.983918
Target:  5'- aGGcGGCc----CGGgcGCCGACGCGAa -3'
miRNA:   3'- gCC-CCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 21536 0.67 0.982037
Target:  5'- gCGGGcGCUGGCguuucgaGGAcGgCGGCGCGGc -3'
miRNA:   3'- -GCCC-CGAUUGag-----CCUuUgGCUGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.