Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 96048 | 0.65 | 0.992151 |
Target: 5'- aGGGGCgAGucgcgggcaccgcCUCGGuacccccuGGCCGAgGCGAg -3' miRNA: 3'- gCCCCGaUU-------------GAGCCu-------UUGGCUgUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 144071 | 0.66 | 0.987228 |
Target: 5'- gCGGGGCUcACggUGGAGGCgGAUuuCGGc -3' miRNA: 3'- -GCCCCGAuUGa-GCCUUUGgCUGu-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 1280 | 0.66 | 0.989986 |
Target: 5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3' miRNA: 3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 154610 | 0.66 | 0.988672 |
Target: 5'- cCGGGGCUGcACuUCGGAGGgUGugAUc- -3' miRNA: 3'- -GCCCCGAU-UG-AGCCUUUgGCugUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 41191 | 0.66 | 0.987228 |
Target: 5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3' miRNA: 3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 99175 | 0.66 | 0.991512 |
Target: 5'- gGGGGCcgucauuaaCGGAAACCguguaugggguccgGACACGAa -3' miRNA: 3'- gCCCCGauuga----GCCUUUGG--------------CUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 43423 | 0.66 | 0.991177 |
Target: 5'- gGGGGUaguuUAAUagCGGAGGCgGAUACGc -3' miRNA: 3'- gCCCCG----AUUGa-GCCUUUGgCUGUGCu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 215045 | 0.66 | 0.991177 |
Target: 5'- uGGGcGCUGccggGCUCGGAa---GGCAUGAa -3' miRNA: 3'- gCCC-CGAU----UGAGCCUuuggCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 61685 | 0.66 | 0.990715 |
Target: 5'- gCGGaGGCguuaaauaccgugAGCcaaUUGGAGAUCGGCGCGGu -3' miRNA: 3'- -GCC-CCGa------------UUG---AGCCUUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 119711 | 0.66 | 0.985646 |
Target: 5'- -aGGGCgucuaccAGCgucagCGGGAuggcGCCGGCGCGAa -3' miRNA: 3'- gcCCCGa------UUGa----GCCUU----UGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 182837 | 0.66 | 0.989986 |
Target: 5'- aCGGcGGCgacgAGCUCGGcuGCUGcaGCACa- -3' miRNA: 3'- -GCC-CCGa---UUGAGCCuuUGGC--UGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 140427 | 0.66 | 0.988672 |
Target: 5'- aGGGaGCcgccgcgaGACcCGGAAGCCGuCGCGGu -3' miRNA: 3'- gCCC-CGa-------UUGaGCCUUUGGCuGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 1253 | 0.66 | 0.987228 |
Target: 5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3' miRNA: 3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 87443 | 0.66 | 0.987228 |
Target: 5'- aCGGGG---GCUCGGAgauGACCGGCu--- -3' miRNA: 3'- -GCCCCgauUGAGCCU---UUGGCUGugcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 196173 | 0.66 | 0.989986 |
Target: 5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3' miRNA: 3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 41473 | 0.66 | 0.985646 |
Target: 5'- uCGGGGCcggagCGGggGCCGugGaagGAu -3' miRNA: 3'- -GCCCCGauugaGCCuuUGGCugUg--CU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 189359 | 0.66 | 0.989986 |
Target: 5'- -cGGGCUuuuGCUCGuGAGgCGGCACGc -3' miRNA: 3'- gcCCCGAu--UGAGCcUUUgGCUGUGCu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 201959 | 0.67 | 0.979996 |
Target: 5'- cCGGGGCUGucgCGcGccGCCGACGCc- -3' miRNA: 3'- -GCCCCGAUugaGC-CuuUGGCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 131851 | 0.67 | 0.975403 |
Target: 5'- uGGGGCUGgccgGCUaCGGcgGCCG-CAuCGAc -3' miRNA: 3'- gCCCCGAU----UGA-GCCuuUGGCuGU-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 21536 | 0.67 | 0.982037 |
Target: 5'- gCGGGcGCUGGCguuucgaGGAcGgCGGCGCGGc -3' miRNA: 3'- -GCCC-CGAUUGag-----CCUuUgGCUGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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