Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 188743 | 1.09 | 0.008215 |
Target: 5'- gCGGGGCUAACUCGGAAACCGACACGAu -3' miRNA: 3'- -GCCCCGAUUGAGCCUUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 20930 | 0.79 | 0.507111 |
Target: 5'- aCGGGGCUGGCguuucuaGGugGCCGugACGAc -3' miRNA: 3'- -GCCCCGAUUGag-----CCuuUGGCugUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 72845 | 0.75 | 0.713789 |
Target: 5'- gGGGGCUcacaguccACUCGGAAagcACCguGACGCGAg -3' miRNA: 3'- gCCCCGAu-------UGAGCCUU---UGG--CUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 112229 | 0.74 | 0.733083 |
Target: 5'- gCGGuGGCaauGCgcggCGGggGCUGGCGCGAg -3' miRNA: 3'- -GCC-CCGau-UGa---GCCuuUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 1732 | 0.73 | 0.788692 |
Target: 5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3' miRNA: 3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 196624 | 0.73 | 0.788692 |
Target: 5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3' miRNA: 3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 195149 | 0.73 | 0.788692 |
Target: 5'- aCGGGGCcgcAAC-CGGGuucuGCCGGCAUGGg -3' miRNA: 3'- -GCCCCGa--UUGaGCCUu---UGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 30471 | 0.73 | 0.806244 |
Target: 5'- uCGGGGCUGACgcggaUCGGAcaucauACUGACGUGAg -3' miRNA: 3'- -GCCCCGAUUG-----AGCCUu-----UGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 218203 | 0.72 | 0.839487 |
Target: 5'- gCGGcGGCcGACggCGGAcGACCGGCAUGGc -3' miRNA: 3'- -GCC-CCGaUUGa-GCCU-UUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 14083 | 0.71 | 0.874858 |
Target: 5'- cCGGGGCUGugaaccgcucagugGCUCGGAccGCCGGCu--- -3' miRNA: 3'- -GCCCCGAU--------------UGAGCCUu-UGGCUGugcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 38131 | 0.71 | 0.889881 |
Target: 5'- --cGGCgcGCUCGGGccggcgaGGCCGACGCGGu -3' miRNA: 3'- gccCCGauUGAGCCU-------UUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 194918 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 25 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 234856 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 38650 | 0.71 | 0.897004 |
Target: 5'- gCGGGGUg----CGGc-GCCGACGCGAa -3' miRNA: 3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 233542 | 0.71 | 0.897004 |
Target: 5'- gCGGGGUg----CGGc-GCCGACGCGAa -3' miRNA: 3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 94379 | 0.71 | 0.903248 |
Target: 5'- cCGGGGCcgugGGC-CGGgcACCgGGCGCGGc -3' miRNA: 3'- -GCCCCGa---UUGaGCCuuUGG-CUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 97426 | 0.71 | 0.903248 |
Target: 5'- gGGGGC--GCUC-GAGACCGACgACGu -3' miRNA: 3'- gCCCCGauUGAGcCUUUGGCUG-UGCu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 171944 | 0.7 | 0.915068 |
Target: 5'- uGGGGCcgguGCUacUGGAAucgauACCGGCAUGAu -3' miRNA: 3'- gCCCCGau--UGA--GCCUU-----UGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 844 | 0.7 | 0.915068 |
Target: 5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3' miRNA: 3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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