Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 40782 | 0.7 | 0.915068 |
Target: 5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3' miRNA: 3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 22643 | 0.7 | 0.92546 |
Target: 5'- aCGGGGCUucaugcuGACguaGGu-ACCGACugGGg -3' miRNA: 3'- -GCCCCGA-------UUGag-CCuuUGGCUGugCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 210303 | 0.7 | 0.925984 |
Target: 5'- gGGGGC--ACgCGGuAACCGACGuCGAa -3' miRNA: 3'- gCCCCGauUGaGCCuUUGGCUGU-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 130064 | 0.7 | 0.925984 |
Target: 5'- gCGGuGGCgc-CUCGGGAACCGAggaACGc -3' miRNA: 3'- -GCC-CCGauuGAGCCUUUGGCUg--UGCu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 600 | 0.69 | 0.94509 |
Target: 5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3' miRNA: 3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 195493 | 0.69 | 0.94509 |
Target: 5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3' miRNA: 3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 81141 | 0.69 | 0.949305 |
Target: 5'- aGGGGUUGcggauggaGCUgGGcgGCCG-CACGAa -3' miRNA: 3'- gCCCCGAU--------UGAgCCuuUGGCuGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 51587 | 0.69 | 0.949305 |
Target: 5'- aGGGGUggcGGCggcagCGGGGucuucuuCCGACACGGg -3' miRNA: 3'- gCCCCGa--UUGa----GCCUUu------GGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 114317 | 0.69 | 0.950928 |
Target: 5'- -aGGGCaAGCUUGaguaccgacacaccuGGGACCGGCACGAc -3' miRNA: 3'- gcCCCGaUUGAGC---------------CUUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 71391 | 0.69 | 0.953298 |
Target: 5'- -uGGGCUGucaGCgUCGGguGCgCGACACGGc -3' miRNA: 3'- gcCCCGAU---UG-AGCCuuUG-GCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 119119 | 0.69 | 0.953298 |
Target: 5'- gGGGGaCUGcgggagaaACUCGGAGacggcGCCGcGCAUGAc -3' miRNA: 3'- gCCCC-GAU--------UGAGCCUU-----UGGC-UGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 17577 | 0.69 | 0.953298 |
Target: 5'- aCGGaGGCcGAgguUUCGGAAGCCGaaguggaaGCGCGAc -3' miRNA: 3'- -GCC-CCGaUU---GAGCCUUUGGC--------UGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 182589 | 0.68 | 0.957074 |
Target: 5'- --cGGUgagAACUCGGAGACCGA-GCGGu -3' miRNA: 3'- gccCCGa--UUGAGCCUUUGGCUgUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 199042 | 0.68 | 0.957074 |
Target: 5'- aGGGGCUucguGCgCGuGggGCUGGCGCu- -3' miRNA: 3'- gCCCCGAu---UGaGC-CuuUGGCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 179754 | 0.68 | 0.960636 |
Target: 5'- -uGGGCUAugUCcgcuucGAGACCGGCGgCGAc -3' miRNA: 3'- gcCCCGAUugAGc-----CUUUGGCUGU-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 148645 | 0.68 | 0.963988 |
Target: 5'- aCGGGaucCUGGCgcCGGAGGCCGGcCugGAg -3' miRNA: 3'- -GCCCc--GAUUGa-GCCUUUGGCU-GugCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 6769 | 0.68 | 0.967136 |
Target: 5'- gGGGGCUGcga-GGGAACCG-CAgGAg -3' miRNA: 3'- gCCCCGAUugagCCUUUGGCuGUgCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 56135 | 0.68 | 0.967136 |
Target: 5'- aCGGGccGCggaggCGGcGACCGACGCGGa -3' miRNA: 3'- -GCCC--CGauugaGCCuUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 175333 | 0.68 | 0.968338 |
Target: 5'- uGGGGCaaguUUCGcuuuugcggcguacaGGAGCCGGCGCGGg -3' miRNA: 3'- gCCCCGauu-GAGC---------------CUUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 94909 | 0.68 | 0.971208 |
Target: 5'- gGGGGCUGggggcccggucaggaGCuUCGGGAGCgGGguCGAc -3' miRNA: 3'- gCCCCGAU---------------UG-AGCCUUUGgCUguGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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