Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 171822 | 0.67 | 0.979996 |
Target: 5'- aCGcGGGCUGAgCUCGGGAguaGCgGAUGCc- -3' miRNA: 3'- -GC-CCCGAUU-GAGCCUU---UGgCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 129972 | 0.67 | 0.979996 |
Target: 5'- uGGGGCUGcuGCUgcaCGGGcucGACCGgcggcugcuguuGCACGGg -3' miRNA: 3'- gCCCCGAU--UGA---GCCU---UUGGC------------UGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 201959 | 0.67 | 0.979996 |
Target: 5'- cCGGGGCUGucgCGcGccGCCGACGCc- -3' miRNA: 3'- -GCCCCGAUugaGC-CuuUGGCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 229573 | 0.67 | 0.977787 |
Target: 5'- aGGGGCUGGacgUGGuuACCGgucACugGAc -3' miRNA: 3'- gCCCCGAUUga-GCCuuUGGC---UGugCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 126537 | 0.67 | 0.975403 |
Target: 5'- gCGGGaGaCUAGgucguCUUGGAAGCCGAUGCa- -3' miRNA: 3'- -GCCC-C-GAUU-----GAGCCUUUGGCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 131851 | 0.67 | 0.975403 |
Target: 5'- uGGGGCUGgccgGCUaCGGcgGCCG-CAuCGAc -3' miRNA: 3'- gCCCCGAU----UGA-GCCuuUGGCuGU-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 193774 | 0.67 | 0.974653 |
Target: 5'- aGGGGCUGGgUgugcgaaaccggugUGGAAGCCGaggaggcuaugGCGCGGc -3' miRNA: 3'- gCCCCGAUUgA--------------GCCUUUGGC-----------UGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 149484 | 0.68 | 0.972837 |
Target: 5'- gGGaGGCgAugUCGGGGACgGGUACGAc -3' miRNA: 3'- gCC-CCGaUugAGCCUUUGgCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 121928 | 0.68 | 0.972837 |
Target: 5'- uGGGGUUGuGCaCGuuGACCGACACGu -3' miRNA: 3'- gCCCCGAU-UGaGCcuUUGGCUGUGCu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 13982 | 0.68 | 0.97257 |
Target: 5'- aCGGGGCg---UCGGAGaguauaaacugggGCgGGCGCGGg -3' miRNA: 3'- -GCCCCGauugAGCCUU-------------UGgCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 94909 | 0.68 | 0.971208 |
Target: 5'- gGGGGCUGggggcccggucaggaGCuUCGGGAGCgGGguCGAc -3' miRNA: 3'- gCCCCGAU---------------UG-AGCCUUUGgCUguGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 175333 | 0.68 | 0.968338 |
Target: 5'- uGGGGCaaguUUCGcuuuugcggcguacaGGAGCCGGCGCGGg -3' miRNA: 3'- gCCCCGauu-GAGC---------------CUUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 6769 | 0.68 | 0.967136 |
Target: 5'- gGGGGCUGcga-GGGAACCG-CAgGAg -3' miRNA: 3'- gCCCCGAUugagCCUUUGGCuGUgCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 56135 | 0.68 | 0.967136 |
Target: 5'- aCGGGccGCggaggCGGcGACCGACGCGGa -3' miRNA: 3'- -GCCC--CGauugaGCCuUUGGCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 148645 | 0.68 | 0.963988 |
Target: 5'- aCGGGaucCUGGCgcCGGAGGCCGGcCugGAg -3' miRNA: 3'- -GCCCc--GAUUGa-GCCUUUGGCU-GugCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 179754 | 0.68 | 0.960636 |
Target: 5'- -uGGGCUAugUCcgcuucGAGACCGGCGgCGAc -3' miRNA: 3'- gcCCCGAUugAGc-----CUUUGGCUGU-GCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 182589 | 0.68 | 0.957074 |
Target: 5'- --cGGUgagAACUCGGAGACCGA-GCGGu -3' miRNA: 3'- gccCCGa--UUGAGCCUUUGGCUgUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 199042 | 0.68 | 0.957074 |
Target: 5'- aGGGGCUucguGCgCGuGggGCUGGCGCu- -3' miRNA: 3'- gCCCCGAu---UGaGC-CuuUGGCUGUGcu -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 71391 | 0.69 | 0.953298 |
Target: 5'- -uGGGCUGucaGCgUCGGguGCgCGACACGGc -3' miRNA: 3'- gcCCCGAU---UG-AGCCuuUG-GCUGUGCU- -5' |
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30194 | 5' | -53.8 | NC_006273.1 | + | 119119 | 0.69 | 0.953298 |
Target: 5'- gGGGGaCUGcgggagaaACUCGGAGacggcGCCGcGCAUGAc -3' miRNA: 3'- gCCCC-GAU--------UGAGCCUU-----UGGC-UGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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