Results 41 - 60 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 17577 | 0.69 | 0.953298 |
Target: 5'- aCGGaGGCcGAgguUUCGGAAGCCGaaguggaaGCGCGAc -3' miRNA: 3'- -GCC-CCGaUU---GAGCCUUUGGC--------UGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 114317 | 0.69 | 0.950928 |
Target: 5'- -aGGGCaAGCUUGaguaccgacacaccuGGGACCGGCACGAc -3' miRNA: 3'- gcCCCGaUUGAGC---------------CUUUGGCUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 51587 | 0.69 | 0.949305 |
Target: 5'- aGGGGUggcGGCggcagCGGGGucuucuuCCGACACGGg -3' miRNA: 3'- gCCCCGa--UUGa----GCCUUu------GGCUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 81141 | 0.69 | 0.949305 |
Target: 5'- aGGGGUUGcggauggaGCUgGGcgGCCG-CACGAa -3' miRNA: 3'- gCCCCGAU--------UGAgCCuuUGGCuGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 600 | 0.69 | 0.94509 |
Target: 5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3' miRNA: 3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 195493 | 0.69 | 0.94509 |
Target: 5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3' miRNA: 3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 210303 | 0.7 | 0.925984 |
Target: 5'- gGGGGC--ACgCGGuAACCGACGuCGAa -3' miRNA: 3'- gCCCCGauUGaGCCuUUGGCUGU-GCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 130064 | 0.7 | 0.925984 |
Target: 5'- gCGGuGGCgc-CUCGGGAACCGAggaACGc -3' miRNA: 3'- -GCC-CCGauuGAGCCUUUGGCUg--UGCu -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 22643 | 0.7 | 0.92546 |
Target: 5'- aCGGGGCUucaugcuGACguaGGu-ACCGACugGGg -3' miRNA: 3'- -GCCCCGA-------UUGag-CCuuUGGCUGugCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 844 | 0.7 | 0.915068 |
Target: 5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3' miRNA: 3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 171944 | 0.7 | 0.915068 |
Target: 5'- uGGGGCcgguGCUacUGGAAucgauACCGGCAUGAu -3' miRNA: 3'- gCCCCGau--UGA--GCCUU-----UGGCUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 40782 | 0.7 | 0.915068 |
Target: 5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3' miRNA: 3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 94379 | 0.71 | 0.903248 |
Target: 5'- cCGGGGCcgugGGC-CGGgcACCgGGCGCGGc -3' miRNA: 3'- -GCCCCGa---UUGaGCCuuUGG-CUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 97426 | 0.71 | 0.903248 |
Target: 5'- gGGGGC--GCUC-GAGACCGACgACGu -3' miRNA: 3'- gCCCCGauUGAGcCUUUGGCUG-UGCu -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 38650 | 0.71 | 0.897004 |
Target: 5'- gCGGGGUg----CGGc-GCCGACGCGAa -3' miRNA: 3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 233542 | 0.71 | 0.897004 |
Target: 5'- gCGGGGUg----CGGc-GCCGACGCGAa -3' miRNA: 3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 25 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 234856 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 194918 | 0.71 | 0.89054 |
Target: 5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3' miRNA: 3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' |
|||||||
30194 | 5' | -53.8 | NC_006273.1 | + | 38131 | 0.71 | 0.889881 |
Target: 5'- --cGGCgcGCUCGGGccggcgaGGCCGACGCGGu -3' miRNA: 3'- gccCCGauUGAGCCU-------UUGGCUGUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home