miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 25 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 600 0.69 0.94509
Target:  5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3'
miRNA:   3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5'
30194 5' -53.8 NC_006273.1 + 844 0.7 0.915068
Target:  5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3'
miRNA:   3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5'
30194 5' -53.8 NC_006273.1 + 1253 0.66 0.987228
Target:  5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3'
miRNA:   3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 1280 0.66 0.989986
Target:  5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3'
miRNA:   3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 1732 0.73 0.788692
Target:  5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3'
miRNA:   3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 6769 0.68 0.967136
Target:  5'- gGGGGCUGcga-GGGAACCG-CAgGAg -3'
miRNA:   3'- gCCCCGAUugagCCUUUGGCuGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 13982 0.68 0.97257
Target:  5'- aCGGGGCg---UCGGAGaguauaaacugggGCgGGCGCGGg -3'
miRNA:   3'- -GCCCCGauugAGCCUU-------------UGgCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 14083 0.71 0.874858
Target:  5'- cCGGGGCUGugaaccgcucagugGCUCGGAccGCCGGCu--- -3'
miRNA:   3'- -GCCCCGAU--------------UGAGCCUu-UGGCUGugcu -5'
30194 5' -53.8 NC_006273.1 + 17577 0.69 0.953298
Target:  5'- aCGGaGGCcGAgguUUCGGAAGCCGaaguggaaGCGCGAc -3'
miRNA:   3'- -GCC-CCGaUU---GAGCCUUUGGC--------UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 20930 0.79 0.507111
Target:  5'- aCGGGGCUGGCguuucuaGGugGCCGugACGAc -3'
miRNA:   3'- -GCCCCGAUUGag-----CCuuUGGCugUGCU- -5'
30194 5' -53.8 NC_006273.1 + 21536 0.67 0.982037
Target:  5'- gCGGGcGCUGGCguuucgaGGAcGgCGGCGCGGc -3'
miRNA:   3'- -GCCC-CGAUUGag-----CCUuUgGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 22643 0.7 0.92546
Target:  5'- aCGGGGCUucaugcuGACguaGGu-ACCGACugGGg -3'
miRNA:   3'- -GCCCCGA-------UUGag-CCuuUGGCUGugCU- -5'
30194 5' -53.8 NC_006273.1 + 30471 0.73 0.806244
Target:  5'- uCGGGGCUGACgcggaUCGGAcaucauACUGACGUGAg -3'
miRNA:   3'- -GCCCCGAUUG-----AGCCUu-----UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 38131 0.71 0.889881
Target:  5'- --cGGCgcGCUCGGGccggcgaGGCCGACGCGGu -3'
miRNA:   3'- gccCCGauUGAGCCU-------UUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 38650 0.71 0.897004
Target:  5'- gCGGGGUg----CGGc-GCCGACGCGAa -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 40782 0.7 0.915068
Target:  5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3'
miRNA:   3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5'
30194 5' -53.8 NC_006273.1 + 41191 0.66 0.987228
Target:  5'- gCGGGGacgGGgaCGGggGCCuuucgcggcgGACACGGg -3'
miRNA:   3'- -GCCCCga-UUgaGCCuuUGG----------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 41473 0.66 0.985646
Target:  5'- uCGGGGCcggagCGGggGCCGugGaagGAu -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCugUg--CU- -5'
30194 5' -53.8 NC_006273.1 + 43423 0.66 0.991177
Target:  5'- gGGGGUaguuUAAUagCGGAGGCgGAUACGc -3'
miRNA:   3'- gCCCCG----AUUGa-GCCUUUGgCUGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.