miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 51587 0.69 0.949305
Target:  5'- aGGGGUggcGGCggcagCGGGGucuucuuCCGACACGGg -3'
miRNA:   3'- gCCCCGa--UUGa----GCCUUu------GGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 56135 0.68 0.967136
Target:  5'- aCGGGccGCggaggCGGcGACCGACGCGGa -3'
miRNA:   3'- -GCCC--CGauugaGCCuUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 61685 0.66 0.990715
Target:  5'- gCGGaGGCguuaaauaccgugAGCcaaUUGGAGAUCGGCGCGGu -3'
miRNA:   3'- -GCC-CCGa------------UUG---AGCCUUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 71391 0.69 0.953298
Target:  5'- -uGGGCUGucaGCgUCGGguGCgCGACACGGc -3'
miRNA:   3'- gcCCCGAU---UG-AGCCuuUG-GCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 72845 0.75 0.713789
Target:  5'- gGGGGCUcacaguccACUCGGAAagcACCguGACGCGAg -3'
miRNA:   3'- gCCCCGAu-------UGAGCCUU---UGG--CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 81141 0.69 0.949305
Target:  5'- aGGGGUUGcggauggaGCUgGGcgGCCG-CACGAa -3'
miRNA:   3'- gCCCCGAU--------UGAgCCuuUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 87443 0.66 0.987228
Target:  5'- aCGGGG---GCUCGGAgauGACCGGCu--- -3'
miRNA:   3'- -GCCCCgauUGAGCCU---UUGGCUGugcu -5'
30194 5' -53.8 NC_006273.1 + 87492 0.67 0.983918
Target:  5'- aGGcGGCc----CGGgcGCCGACGCGAa -3'
miRNA:   3'- gCC-CCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 94379 0.71 0.903248
Target:  5'- cCGGGGCcgugGGC-CGGgcACCgGGCGCGGc -3'
miRNA:   3'- -GCCCCGa---UUGaGCCuuUGG-CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 94909 0.68 0.971208
Target:  5'- gGGGGCUGggggcccggucaggaGCuUCGGGAGCgGGguCGAc -3'
miRNA:   3'- gCCCCGAU---------------UG-AGCCUUUGgCUguGCU- -5'
30194 5' -53.8 NC_006273.1 + 96048 0.65 0.992151
Target:  5'- aGGGGCgAGucgcgggcaccgcCUCGGuacccccuGGCCGAgGCGAg -3'
miRNA:   3'- gCCCCGaUU-------------GAGCCu-------UUGGCUgUGCU- -5'
30194 5' -53.8 NC_006273.1 + 97426 0.71 0.903248
Target:  5'- gGGGGC--GCUC-GAGACCGACgACGu -3'
miRNA:   3'- gCCCCGauUGAGcCUUUGGCUG-UGCu -5'
30194 5' -53.8 NC_006273.1 + 99175 0.66 0.991512
Target:  5'- gGGGGCcgucauuaaCGGAAACCguguaugggguccgGACACGAa -3'
miRNA:   3'- gCCCCGauuga----GCCUUUGG--------------CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 112229 0.74 0.733083
Target:  5'- gCGGuGGCaauGCgcggCGGggGCUGGCGCGAg -3'
miRNA:   3'- -GCC-CCGau-UGa---GCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 114317 0.69 0.950928
Target:  5'- -aGGGCaAGCUUGaguaccgacacaccuGGGACCGGCACGAc -3'
miRNA:   3'- gcCCCGaUUGAGC---------------CUUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 119119 0.69 0.953298
Target:  5'- gGGGGaCUGcgggagaaACUCGGAGacggcGCCGcGCAUGAc -3'
miRNA:   3'- gCCCC-GAU--------UGAGCCUU-----UGGC-UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 119711 0.66 0.985646
Target:  5'- -aGGGCgucuaccAGCgucagCGGGAuggcGCCGGCGCGAa -3'
miRNA:   3'- gcCCCGa------UUGa----GCCUU----UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 121928 0.68 0.972837
Target:  5'- uGGGGUUGuGCaCGuuGACCGACACGu -3'
miRNA:   3'- gCCCCGAU-UGaGCcuUUGGCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 126537 0.67 0.975403
Target:  5'- gCGGGaGaCUAGgucguCUUGGAAGCCGAUGCa- -3'
miRNA:   3'- -GCCC-C-GAUU-----GAGCCUUUGGCUGUGcu -5'
30194 5' -53.8 NC_006273.1 + 129972 0.67 0.979996
Target:  5'- uGGGGCUGcuGCUgcaCGGGcucGACCGgcggcugcuguuGCACGGg -3'
miRNA:   3'- gCCCCGAU--UGA---GCCU---UUGGC------------UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.