miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 234856 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 233542 0.71 0.897004
Target:  5'- gCGGGGUg----CGGc-GCCGACGCGAa -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 229573 0.67 0.977787
Target:  5'- aGGGGCUGGacgUGGuuACCGgucACugGAc -3'
miRNA:   3'- gCCCCGAUUga-GCCuuUGGC---UGugCU- -5'
30194 5' -53.8 NC_006273.1 + 218203 0.72 0.839487
Target:  5'- gCGGcGGCcGACggCGGAcGACCGGCAUGGc -3'
miRNA:   3'- -GCC-CCGaUUGa-GCCU-UUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 215045 0.66 0.991177
Target:  5'- uGGGcGCUGccggGCUCGGAa---GGCAUGAa -3'
miRNA:   3'- gCCC-CGAU----UGAGCCUuuggCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 210303 0.7 0.925984
Target:  5'- gGGGGC--ACgCGGuAACCGACGuCGAa -3'
miRNA:   3'- gCCCCGauUGaGCCuUUGGCUGU-GCU- -5'
30194 5' -53.8 NC_006273.1 + 201959 0.67 0.979996
Target:  5'- cCGGGGCUGucgCGcGccGCCGACGCc- -3'
miRNA:   3'- -GCCCCGAUugaGC-CuuUGGCUGUGcu -5'
30194 5' -53.8 NC_006273.1 + 199042 0.68 0.957074
Target:  5'- aGGGGCUucguGCgCGuGggGCUGGCGCu- -3'
miRNA:   3'- gCCCCGAu---UGaGC-CuuUGGCUGUGcu -5'
30194 5' -53.8 NC_006273.1 + 196624 0.73 0.788692
Target:  5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3'
miRNA:   3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 196173 0.66 0.989986
Target:  5'- gCGGGcacGCUGcugccGCUCGGAcGGCCG-UACGGa -3'
miRNA:   3'- -GCCC---CGAU-----UGAGCCU-UUGGCuGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 195493 0.69 0.94509
Target:  5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3'
miRNA:   3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5'
30194 5' -53.8 NC_006273.1 + 195149 0.73 0.788692
Target:  5'- aCGGGGCcgcAAC-CGGGuucuGCCGGCAUGGg -3'
miRNA:   3'- -GCCCCGa--UUGaGCCUu---UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 194918 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 193774 0.67 0.974653
Target:  5'- aGGGGCUGGgUgugcgaaaccggugUGGAAGCCGaggaggcuaugGCGCGGc -3'
miRNA:   3'- gCCCCGAUUgA--------------GCCUUUGGC-----------UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 189359 0.66 0.989986
Target:  5'- -cGGGCUuuuGCUCGuGAGgCGGCACGc -3'
miRNA:   3'- gcCCCGAu--UGAGCcUUUgGCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 188743 1.09 0.008215
Target:  5'- gCGGGGCUAACUCGGAAACCGACACGAu -3'
miRNA:   3'- -GCCCCGAUUGAGCCUUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 182837 0.66 0.989986
Target:  5'- aCGGcGGCgacgAGCUCGGcuGCUGcaGCACa- -3'
miRNA:   3'- -GCC-CCGa---UUGAGCCuuUGGC--UGUGcu -5'
30194 5' -53.8 NC_006273.1 + 182589 0.68 0.957074
Target:  5'- --cGGUgagAACUCGGAGACCGA-GCGGu -3'
miRNA:   3'- gccCCGa--UUGAGCCUUUGGCUgUGCU- -5'
30194 5' -53.8 NC_006273.1 + 179754 0.68 0.960636
Target:  5'- -uGGGCUAugUCcgcuucGAGACCGGCGgCGAc -3'
miRNA:   3'- gcCCCGAUugAGc-----CUUUGGCUGU-GCU- -5'
30194 5' -53.8 NC_006273.1 + 175333 0.68 0.968338
Target:  5'- uGGGGCaaguUUCGcuuuugcggcguacaGGAGCCGGCGCGGg -3'
miRNA:   3'- gCCCCGauu-GAGC---------------CUUUGGCUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.