miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 193774 0.67 0.974653
Target:  5'- aGGGGCUGGgUgugcgaaaccggugUGGAAGCCGaggaggcuaugGCGCGGc -3'
miRNA:   3'- gCCCCGAUUgA--------------GCCUUUGGC-----------UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 130064 0.7 0.925984
Target:  5'- gCGGuGGCgc-CUCGGGAACCGAggaACGc -3'
miRNA:   3'- -GCC-CCGauuGAGCCUUUGGCUg--UGCu -5'
30194 5' -53.8 NC_006273.1 + 195493 0.69 0.94509
Target:  5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3'
miRNA:   3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5'
30194 5' -53.8 NC_006273.1 + 51587 0.69 0.949305
Target:  5'- aGGGGUggcGGCggcagCGGGGucuucuuCCGACACGGg -3'
miRNA:   3'- gCCCCGa--UUGa----GCCUUu------GGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 71391 0.69 0.953298
Target:  5'- -uGGGCUGucaGCgUCGGguGCgCGACACGGc -3'
miRNA:   3'- gcCCCGAU---UG-AGCCuuUG-GCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 119119 0.69 0.953298
Target:  5'- gGGGGaCUGcgggagaaACUCGGAGacggcGCCGcGCAUGAc -3'
miRNA:   3'- gCCCC-GAU--------UGAGCCUU-----UGGC-UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 56135 0.68 0.967136
Target:  5'- aCGGGccGCggaggCGGcGACCGACGCGGa -3'
miRNA:   3'- -GCCC--CGauugaGCCuUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 94909 0.68 0.971208
Target:  5'- gGGGGCUGggggcccggucaggaGCuUCGGGAGCgGGguCGAc -3'
miRNA:   3'- gCCCCGAU---------------UG-AGCCUUUGgCUguGCU- -5'
30194 5' -53.8 NC_006273.1 + 121928 0.68 0.972837
Target:  5'- uGGGGUUGuGCaCGuuGACCGACACGu -3'
miRNA:   3'- gCCCCGAU-UGaGCcuUUGGCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 22643 0.7 0.92546
Target:  5'- aCGGGGCUucaugcuGACguaGGu-ACCGACugGGg -3'
miRNA:   3'- -GCCCCGA-------UUGag-CCuuUGGCUGugCU- -5'
30194 5' -53.8 NC_006273.1 + 171944 0.7 0.915068
Target:  5'- uGGGGCcgguGCUacUGGAAucgauACCGGCAUGAu -3'
miRNA:   3'- gCCCCGau--UGA--GCCUU-----UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 844 0.7 0.915068
Target:  5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3'
miRNA:   3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5'
30194 5' -53.8 NC_006273.1 + 112229 0.74 0.733083
Target:  5'- gCGGuGGCaauGCgcggCGGggGCUGGCGCGAg -3'
miRNA:   3'- -GCC-CCGau-UGa---GCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 196624 0.73 0.788692
Target:  5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3'
miRNA:   3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 218203 0.72 0.839487
Target:  5'- gCGGcGGCcGACggCGGAcGACCGGCAUGGc -3'
miRNA:   3'- -GCC-CCGaUUGa-GCCU-UUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 38131 0.71 0.889881
Target:  5'- --cGGCgcGCUCGGGccggcgaGGCCGACGCGGu -3'
miRNA:   3'- gccCCGauUGAGCCU-------UUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 194918 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 233542 0.71 0.897004
Target:  5'- gCGGGGUg----CGGc-GCCGACGCGAa -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 97426 0.71 0.903248
Target:  5'- gGGGGC--GCUC-GAGACCGACgACGu -3'
miRNA:   3'- gCCCCGauUGAGcCUUUGGCUG-UGCu -5'
30194 5' -53.8 NC_006273.1 + 94379 0.71 0.903248
Target:  5'- cCGGGGCcgugGGC-CGGgcACCgGGCGCGGc -3'
miRNA:   3'- -GCCCCGa---UUGaGCCuuUGG-CUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.