miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30194 5' -53.8 NC_006273.1 + 20930 0.79 0.507111
Target:  5'- aCGGGGCUGGCguuucuaGGugGCCGugACGAc -3'
miRNA:   3'- -GCCCCGAUUGag-----CCuuUGGCugUGCU- -5'
30194 5' -53.8 NC_006273.1 + 179754 0.68 0.960636
Target:  5'- -uGGGCUAugUCcgcuucGAGACCGGCGgCGAc -3'
miRNA:   3'- gcCCCGAUugAGc-----CUUUGGCUGU-GCU- -5'
30194 5' -53.8 NC_006273.1 + 6769 0.68 0.967136
Target:  5'- gGGGGCUGcga-GGGAACCG-CAgGAg -3'
miRNA:   3'- gCCCCGAUugagCCUUUGGCuGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 189359 0.66 0.989986
Target:  5'- -cGGGCUuuuGCUCGuGAGgCGGCACGc -3'
miRNA:   3'- gcCCCGAu--UGAGCcUUUgGCUGUGCu -5'
30194 5' -53.8 NC_006273.1 + 30471 0.73 0.806244
Target:  5'- uCGGGGCUGACgcggaUCGGAcaucauACUGACGUGAg -3'
miRNA:   3'- -GCCCCGAUUG-----AGCCUu-----UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 14083 0.71 0.874858
Target:  5'- cCGGGGCUGugaaccgcucagugGCUCGGAccGCCGGCu--- -3'
miRNA:   3'- -GCCCCGAU--------------UGAGCCUu-UGGCUGugcu -5'
30194 5' -53.8 NC_006273.1 + 234856 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5'
30194 5' -53.8 NC_006273.1 + 38650 0.71 0.897004
Target:  5'- gCGGGGUg----CGGc-GCCGACGCGAa -3'
miRNA:   3'- -GCCCCGauugaGCCuuUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 600 0.69 0.94509
Target:  5'- aGGGuGCgcGCUCGGGGACCcagucCGCGGc -3'
miRNA:   3'- gCCC-CGauUGAGCCUUUGGcu---GUGCU- -5'
30194 5' -53.8 NC_006273.1 + 182589 0.68 0.957074
Target:  5'- --cGGUgagAACUCGGAGACCGA-GCGGu -3'
miRNA:   3'- gccCCGa--UUGAGCCUUUGGCUgUGCU- -5'
30194 5' -53.8 NC_006273.1 + 114317 0.69 0.950928
Target:  5'- -aGGGCaAGCUUGaguaccgacacaccuGGGACCGGCACGAc -3'
miRNA:   3'- gcCCCGaUUGAGC---------------CUUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 210303 0.7 0.925984
Target:  5'- gGGGGC--ACgCGGuAACCGACGuCGAa -3'
miRNA:   3'- gCCCCGauUGaGCCuUUGGCUGU-GCU- -5'
30194 5' -53.8 NC_006273.1 + 72845 0.75 0.713789
Target:  5'- gGGGGCUcacaguccACUCGGAAagcACCguGACGCGAg -3'
miRNA:   3'- gCCCCGAu-------UGAGCCUU---UGG--CUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 17577 0.69 0.953298
Target:  5'- aCGGaGGCcGAgguUUCGGAAGCCGaaguggaaGCGCGAc -3'
miRNA:   3'- -GCC-CCGaUU---GAGCCUUUGGC--------UGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 1732 0.73 0.788692
Target:  5'- aCGGGaGCUGcGCcggCGGuGGGCCGGCACGAc -3'
miRNA:   3'- -GCCC-CGAU-UGa--GCC-UUUGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 40782 0.7 0.915068
Target:  5'- aCGGGGUguugcgggcGCUCGGggGuuGGCgGCGGg -3'
miRNA:   3'- -GCCCCGau-------UGAGCCuuUggCUG-UGCU- -5'
30194 5' -53.8 NC_006273.1 + 199042 0.68 0.957074
Target:  5'- aGGGGCUucguGCgCGuGggGCUGGCGCu- -3'
miRNA:   3'- gCCCCGAu---UGaGC-CuuUGGCUGUGcu -5'
30194 5' -53.8 NC_006273.1 + 148645 0.68 0.963988
Target:  5'- aCGGGaucCUGGCgcCGGAGGCCGGcCugGAg -3'
miRNA:   3'- -GCCCc--GAUUGa-GCCUUUGGCU-GugCU- -5'
30194 5' -53.8 NC_006273.1 + 195149 0.73 0.788692
Target:  5'- aCGGGGCcgcAAC-CGGGuucuGCCGGCAUGGg -3'
miRNA:   3'- -GCCCCGa--UUGaGCCUu---UGGCUGUGCU- -5'
30194 5' -53.8 NC_006273.1 + 25 0.71 0.89054
Target:  5'- uCGGGG-UGugUCGGggGCgCGGCGgGGu -3'
miRNA:   3'- -GCCCCgAUugAGCCuuUG-GCUGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.