miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 196985 0.66 0.666809
Target:  5'- uGCCGCcaccGCAgCgGCGGCGacggaCGGCGGcGg -3'
miRNA:   3'- -UGGCGc---CGUgGaCGCCGCa----GCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 169969 0.66 0.666809
Target:  5'- uACCGCugaGGUcCUUGCGGCGUUucuCGGGu -3'
miRNA:   3'- -UGGCG---CCGuGGACGCCGCAGcc-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 14209 0.66 0.666809
Target:  5'- uCCGCGGCGCUUgggaGCGGgGUgaCGGUGu- -3'
miRNA:   3'- uGGCGCCGUGGA----CGCCgCA--GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 167787 0.66 0.657556
Target:  5'- cGCCGCGGCGCUaccacgauggUGCgaugGGUcuuucucuuGUUGGcCGGGg -3'
miRNA:   3'- -UGGCGCCGUGG----------ACG----CCG---------CAGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 54544 0.66 0.657556
Target:  5'- aGCCgGCGGUGCUguugGCGGUG-CGGCa-- -3'
miRNA:   3'- -UGG-CGCCGUGGa---CGCCGCaGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 79047 0.66 0.651996
Target:  5'- gGCUG-GGCccacgcgccaccagaGCCUGCGGCGUCaGGCc-- -3'
miRNA:   3'- -UGGCgCCG---------------UGGACGCCGCAG-CCGccc -5'
30195 3' -65.1 NC_006273.1 + 196094 0.66 0.648287
Target:  5'- gGCCaugGGCGCCgUGUGGCGcgCGGCGu- -3'
miRNA:   3'- -UGGcg-CCGUGG-ACGCCGCa-GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 29140 0.66 0.648287
Target:  5'- --gGCGGC-CUUGaCGGCGUUGGCa-- -3'
miRNA:   3'- uggCGCCGuGGAC-GCCGCAGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 149554 0.66 0.648287
Target:  5'- aGCgGCGGCGgUgguaGUGGCGUgGGCGa- -3'
miRNA:   3'- -UGgCGCCGUgGa---CGCCGCAgCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 31016 0.66 0.648287
Target:  5'- aGCCuaCGGCACCUGgGGUaaCGaGCGGa -3'
miRNA:   3'- -UGGc-GCCGUGGACgCCGcaGC-CGCCc -5'
30195 3' -65.1 NC_006273.1 + 1201 0.66 0.648287
Target:  5'- gGCCaugGGCGCCgUGUGGCGcgCGGCGu- -3'
miRNA:   3'- -UGGcg-CCGUGG-ACGCCGCa-GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 175330 0.66 0.648287
Target:  5'- uACUGgGGCAaguuucgcuUUUGCGGCGUacaggagcCGGCGcGGg -3'
miRNA:   3'- -UGGCgCCGU---------GGACGCCGCA--------GCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 130237 0.66 0.647359
Target:  5'- cGCCGCuuucccccugaacGacCGCCgGUGGCGUCGGUGGu -3'
miRNA:   3'- -UGGCG-------------Cc-GUGGaCGCCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 233885 0.66 0.644575
Target:  5'- uCCGCGGCgucgagcuccaucuGCgUGCGGUguuguuuGUCGGCGu- -3'
miRNA:   3'- uGGCGCCG--------------UGgACGCCG-------CAGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 2061 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 196954 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 196594 0.66 0.639007
Target:  5'- uGCUGC-GCGCCgagagGCgacGGCGcUCGGaCGGGa -3'
miRNA:   3'- -UGGCGcCGUGGa----CG---CCGC-AGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 214948 0.66 0.639007
Target:  5'- aACCGUGGCACCguagGCGGaacagcuGcCaGCGGa -3'
miRNA:   3'- -UGGCGCCGUGGa---CGCCg------CaGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 111216 0.66 0.639007
Target:  5'- --gGCGGCGgCgGUGGCGUUGGCa-- -3'
miRNA:   3'- uggCGCCGUgGaCGCCGCAGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 157228 0.66 0.639007
Target:  5'- uGCCGCGGCGCUUGCacuuGGaGcCGGCu-- -3'
miRNA:   3'- -UGGCGCCGUGGACG----CCgCaGCCGccc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.