miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 167787 0.66 0.657556
Target:  5'- cGCCGCGGCGCUaccacgauggUGCgaugGGUcuuucucuuGUUGGcCGGGg -3'
miRNA:   3'- -UGGCGCCGUGG----------ACG----CCG---------CAGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 81594 0.66 0.620439
Target:  5'- cGCagGCGGCGgCcGCGGcCG-CGGCGGa -3'
miRNA:   3'- -UGg-CGCCGUgGaCGCC-GCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 61744 0.66 0.620439
Target:  5'- gACCGCGaGCGCCgUGCGcGCcUUcGUGGGu -3'
miRNA:   3'- -UGGCGC-CGUGG-ACGC-CGcAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 79047 0.66 0.651996
Target:  5'- gGCUG-GGCccacgcgccaccagaGCCUGCGGCGUCaGGCc-- -3'
miRNA:   3'- -UGGCgCCG---------------UGGACGCCGCAG-CCGccc -5'
30195 3' -65.1 NC_006273.1 + 234468 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 105166 0.66 0.624151
Target:  5'- -gCGCGGCGCC-GCGGCcucgcccagguagccGgagaCGGCGGu -3'
miRNA:   3'- ugGCGCCGUGGaCGCCG---------------Ca---GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 54544 0.66 0.657556
Target:  5'- aGCCgGCGGUGCUguugGCGGUG-CGGCa-- -3'
miRNA:   3'- -UGG-CGCCGUGGa---CGCCGCaGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 41489 0.66 0.629722
Target:  5'- gGCCGUGGaaggaUUGacaGGCGUCGGCGugaGGa -3'
miRNA:   3'- -UGGCGCCgug--GACg--CCGCAGCCGC---CC- -5'
30195 3' -65.1 NC_006273.1 + 149554 0.66 0.648287
Target:  5'- aGCgGCGGCGgUgguaGUGGCGUgGGCGa- -3'
miRNA:   3'- -UGgCGCCGUgGa---CGCCGCAgCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 196954 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 14209 0.66 0.666809
Target:  5'- uCCGCGGCGCUUgggaGCGGgGUgaCGGUGu- -3'
miRNA:   3'- uGGCGCCGUGGA----CGCCgCA--GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 39575 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 160825 0.66 0.620439
Target:  5'- --gGCGGCAUgCUGCGGCGaugcugUCGGUGa- -3'
miRNA:   3'- uggCGCCGUG-GACGCCGC------AGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 64250 0.66 0.620439
Target:  5'- cCCGCgGGCACggGCGuuGCGgCGGCGGc -3'
miRNA:   3'- uGGCG-CCGUGgaCGC--CGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 196594 0.66 0.639007
Target:  5'- uGCUGC-GCGCCgagagGCgacGGCGcUCGGaCGGGa -3'
miRNA:   3'- -UGGCGcCGUGGa----CG---CCGC-AGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 72581 0.66 0.611163
Target:  5'- aGCUGCGGCgACC-GCGGCugccGUUGGUGa- -3'
miRNA:   3'- -UGGCGCCG-UGGaCGCCG----CAGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 36717 0.66 0.638078
Target:  5'- gGCCGCGagcggaggcGCGCgaGCGGCGgcacagcUCGGCccgauggucGGGa -3'
miRNA:   3'- -UGGCGC---------CGUGgaCGCCGC-------AGCCG---------CCC- -5'
30195 3' -65.1 NC_006273.1 + 196094 0.66 0.648287
Target:  5'- gGCCaugGGCGCCgUGUGGCGcgCGGCGu- -3'
miRNA:   3'- -UGGcg-CCGUGG-ACGCCGCa-GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 65541 0.66 0.626936
Target:  5'- uCCGCGGUACCaccguccuacagcUGCGGCGaaggggcccugcCGGCccuGGGc -3'
miRNA:   3'- uGGCGCCGUGG-------------ACGCCGCa-----------GCCG---CCC- -5'
30195 3' -65.1 NC_006273.1 + 39824 0.66 0.611163
Target:  5'- uACaCGgGGCucaGCgUGUGGCG-CGGCGGc -3'
miRNA:   3'- -UG-GCgCCG---UGgACGCCGCaGCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.