miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 2061 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 214948 0.66 0.639007
Target:  5'- aACCGUGGCACCguagGCGGaacagcuGcCaGCGGa -3'
miRNA:   3'- -UGGCGCCGUGGa---CGCCg------CaGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 54544 0.66 0.657556
Target:  5'- aGCCgGCGGUGCUguugGCGGUG-CGGCa-- -3'
miRNA:   3'- -UGG-CGCCGUGGa---CGCCGCaGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 169969 0.66 0.666809
Target:  5'- uACCGCugaGGUcCUUGCGGCGUUucuCGGGu -3'
miRNA:   3'- -UGGCG---CCGuGGACGCCGCAGcc-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 167787 0.66 0.657556
Target:  5'- cGCCGCGGCGCUaccacgauggUGCgaugGGUcuuucucuuGUUGGcCGGGg -3'
miRNA:   3'- -UGGCGCCGUGG----------ACG----CCG---------CAGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 41489 0.66 0.629722
Target:  5'- gGCCGUGGaaggaUUGacaGGCGUCGGCGugaGGa -3'
miRNA:   3'- -UGGCGCCgug--GACg--CCGCAGCCGC---CC- -5'
30195 3' -65.1 NC_006273.1 + 185903 0.66 0.628793
Target:  5'- uACCGCGGCgacguggagaGCCUGuCGGCcGagGugaccaaGCGGGg -3'
miRNA:   3'- -UGGCGCCG----------UGGAC-GCCG-CagC-------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 130237 0.66 0.647359
Target:  5'- cGCCGCuuucccccugaacGacCGCCgGUGGCGUCGGUGGu -3'
miRNA:   3'- -UGGCG-------------Cc-GUGGaCGCCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 79047 0.66 0.651996
Target:  5'- gGCUG-GGCccacgcgccaccagaGCCUGCGGCGUCaGGCc-- -3'
miRNA:   3'- -UGGCgCCG---------------UGGACGCCGCAG-CCGccc -5'
30195 3' -65.1 NC_006273.1 + 149554 0.66 0.648287
Target:  5'- aGCgGCGGCGgUgguaGUGGCGUgGGCGa- -3'
miRNA:   3'- -UGgCGCCGUgGa---CGCCGCAgCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 39575 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 116978 0.66 0.629722
Target:  5'- aGCUGCGGCgGCUUG-GGCagcagCGGCGGc -3'
miRNA:   3'- -UGGCGCCG-UGGACgCCGca---GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 175330 0.66 0.648287
Target:  5'- uACUGgGGCAaguuucgcuUUUGCGGCGUacaggagcCGGCGcGGg -3'
miRNA:   3'- -UGGCgCCGU---------GGACGCCGCA--------GCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 1201 0.66 0.648287
Target:  5'- gGCCaugGGCGCCgUGUGGCGcgCGGCGu- -3'
miRNA:   3'- -UGGcg-CCGUGG-ACGCCGCa-GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 198272 0.66 0.629722
Target:  5'- gGCCuGCGGCguuACUUGCGGCGcuUCGa-GGGc -3'
miRNA:   3'- -UGG-CGCCG---UGGACGCCGC--AGCcgCCC- -5'
30195 3' -65.1 NC_006273.1 + 157228 0.66 0.639007
Target:  5'- uGCCGCGGCGCUUGCacuuGGaGcCGGCu-- -3'
miRNA:   3'- -UGGCGCCGUGGACG----CCgCaGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 81594 0.66 0.620439
Target:  5'- cGCagGCGGCGgCcGCGGcCG-CGGCGGa -3'
miRNA:   3'- -UGg-CGCCGUgGaCGCC-GCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 38059 0.67 0.577916
Target:  5'- uGCuCGCGGUccagcucgggcagcaGCCgccgcGCGGCcUCGGCGGcGg -3'
miRNA:   3'- -UG-GCGCCG---------------UGGa----CGCCGcAGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 196890 0.67 0.605603
Target:  5'- cGCCaGCGGCGa--GCGGCacggagacggaggccGcCGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGUggaCGCCG---------------CaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 197171 0.67 0.581594
Target:  5'- cGCCGCGGUuuccGCCgucuccggaugaGCGGcCG-CGGCGcGGg -3'
miRNA:   3'- -UGGCGCCG----UGGa-----------CGCC-GCaGCCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.