miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 189312 1.08 0.00101
Target:  5'- cACCGCGGCACCUGCGGCGUCGGCGGGu -3'
miRNA:   3'- -UGGCGCCGUGGACGCCGCAGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 62041 0.82 0.067775
Target:  5'- aGCgGCGGCACC-GCGGCGgCGGCGGa -3'
miRNA:   3'- -UGgCGCCGUGGaCGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 94714 0.8 0.097404
Target:  5'- cGCCGuCGuCGCCUGCGGCGUUGGCgcaGGGa -3'
miRNA:   3'- -UGGC-GCcGUGGACGCCGCAGCCG---CCC- -5'
30195 3' -65.1 NC_006273.1 + 189842 0.78 0.13262
Target:  5'- cGCCggGUGGCAUCUGCGGCa-UGGCGGGg -3'
miRNA:   3'- -UGG--CGCCGUGGACGCCGcaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 162370 0.78 0.13262
Target:  5'- gGCgGCGGCGCUagugGUGGCGguggcggCGGCGGGa -3'
miRNA:   3'- -UGgCGCCGUGGa---CGCCGCa------GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 147537 0.77 0.159798
Target:  5'- -aCGcCGGCgaagacgagGCUgGCGGCGUCGGCGGGa -3'
miRNA:   3'- ugGC-GCCG---------UGGaCGCCGCAGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 137399 0.76 0.187597
Target:  5'- cGCCGCGGaCGCCUGCGaCGUUGGCu-- -3'
miRNA:   3'- -UGGCGCC-GUGGACGCcGCAGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 100458 0.74 0.229521
Target:  5'- -aCGCGGCGCC---GGUGUCGGCGGa -3'
miRNA:   3'- ugGCGCCGUGGacgCCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 162999 0.74 0.245163
Target:  5'- gACgGCGGCAgCUGCGGCGguaggacacGCGGGc -3'
miRNA:   3'- -UGgCGCCGUgGACGCCGCagc------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 73765 0.74 0.245163
Target:  5'- gGCaGCGGCGCCgccaGCGGCGaccaUGGUGGGa -3'
miRNA:   3'- -UGgCGCCGUGGa---CGCCGCa---GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 144415 0.74 0.247314
Target:  5'- uGCC-CGGCGCCgcgGCGGCGgacgguucggguggCGGCGGc -3'
miRNA:   3'- -UGGcGCCGUGGa--CGCCGCa-------------GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 99500 0.74 0.25057
Target:  5'- cUUGCGGUACCggugGUGGCGgCGGCGGc -3'
miRNA:   3'- uGGCGCCGUGGa---CGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 39170 0.74 0.256075
Target:  5'- gGCUGCGGCGgugcuCCgaGCGGCGUU-GCGGGg -3'
miRNA:   3'- -UGGCGCCGU-----GGa-CGCCGCAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 188370 0.73 0.273185
Target:  5'- cACCGCGGuCAUCcaagucggGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGGCGCC-GUGGa-------CGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 87748 0.73 0.273185
Target:  5'- gGCUGCGGCgGCCguugucGCGGCGUuugcUGGCGGu -3'
miRNA:   3'- -UGGCGCCG-UGGa-----CGCCGCA----GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 33233 0.73 0.279089
Target:  5'- cACCGagGGCcCCgggGCGGCGacgaCGGCGGGu -3'
miRNA:   3'- -UGGCg-CCGuGGa--CGCCGCa---GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 188875 0.73 0.279089
Target:  5'- uCCGCGGUggcuUUUGUGGCGUCGGCguuuucGGGa -3'
miRNA:   3'- uGGCGCCGu---GGACGCCGCAGCCG------CCC- -5'
30195 3' -65.1 NC_006273.1 + 32749 0.73 0.2912
Target:  5'- gGCCGCGcuccaGCAaCUGCGGCagcgaGUCGGCGGc -3'
miRNA:   3'- -UGGCGC-----CGUgGACGCCG-----CAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 138160 0.72 0.297409
Target:  5'- gGCgGCGGCcacgGCCUGCGGgca-GGCGGGu -3'
miRNA:   3'- -UGgCGCCG----UGGACGCCgcagCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 30678 0.72 0.303719
Target:  5'- cCUGCGGCcgGCC-GCGGUGcCGGCGGc -3'
miRNA:   3'- uGGCGCCG--UGGaCGCCGCaGCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.