miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 2226 0.72 0.323266
Target:  5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 167322 0.72 0.323266
Target:  5'- aGCgGCGGCAgCgGCGGCcaCGGCGGc -3'
miRNA:   3'- -UGgCGCCGUgGaCGCCGcaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 197119 0.72 0.323266
Target:  5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 141164 0.71 0.343736
Target:  5'- uGCCGCGGa--CUGCGcCGgggggCGGCGGGc -3'
miRNA:   3'- -UGGCGCCgugGACGCcGCa----GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 164450 0.71 0.343736
Target:  5'- gGCCGCGGcCGCUcgaugacgaUGuCGGCG-CGGCGGc -3'
miRNA:   3'- -UGGCGCC-GUGG---------AC-GCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 44790 0.71 0.350763
Target:  5'- cGCCGCGGCcgaUG-GGCGcCGGCGGa -3'
miRNA:   3'- -UGGCGCCGuggACgCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 197083 0.71 0.350763
Target:  5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3'
miRNA:   3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 2190 0.71 0.350763
Target:  5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3'
miRNA:   3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 16648 0.71 0.357892
Target:  5'- uGCCGCuGGUACCUGCugGGCG-CcGUGGGc -3'
miRNA:   3'- -UGGCG-CCGUGGACG--CCGCaGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 213678 0.71 0.364395
Target:  5'- aGCCGCGcCgacaaagGCCUGCGGCGaCGGCuGGc -3'
miRNA:   3'- -UGGCGCcG-------UGGACGCCGCaGCCGcCC- -5'
30195 3' -65.1 NC_006273.1 + 167656 0.71 0.365122
Target:  5'- aGCgGCGGCGCaacgGCGGgGUCGGCc-- -3'
miRNA:   3'- -UGgCGCCGUGga--CGCCgCAGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 218192 0.71 0.379882
Target:  5'- -gCGUGGCAUggGCGGCGgccgaCGGCGGa -3'
miRNA:   3'- ugGCGCCGUGgaCGCCGCa----GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 163077 0.7 0.38741
Target:  5'- gGCgGCGGCGacgGCGGCGgCuGCGGGg -3'
miRNA:   3'- -UGgCGCCGUggaCGCCGCaGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 147392 0.7 0.38741
Target:  5'- gACCuGuCGGCGCuCUucgcgcccaGUGGCGUCGGCGcGGc -3'
miRNA:   3'- -UGG-C-GCCGUG-GA---------CGCCGCAGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 145075 0.7 0.394269
Target:  5'- aGCCGCGGgcgaCGCCgcugGCGGCGgCGcugaucaccaccuGCGGGg -3'
miRNA:   3'- -UGGCGCC----GUGGa---CGCCGCaGC-------------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 57696 0.7 0.395035
Target:  5'- aGCCGCaGCGCCa---GCGUCGGCGGc -3'
miRNA:   3'- -UGGCGcCGUGGacgcCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 191808 0.7 0.395035
Target:  5'- cGCCGCGGCACUUGCcuacGGCG-CuGCuccaGGGa -3'
miRNA:   3'- -UGGCGCCGUGGACG----CCGCaGcCG----CCC- -5'
30195 3' -65.1 NC_006273.1 + 145747 0.7 0.395035
Target:  5'- aGCUGCGGC-UCUGCGGUaGUgGcuGCGGGg -3'
miRNA:   3'- -UGGCGCCGuGGACGCCG-CAgC--CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 83401 0.7 0.395035
Target:  5'- cGCCGCcacccGGC-CCgGCGGCGccCGaGCGGGa -3'
miRNA:   3'- -UGGCG-----CCGuGGaCGCCGCa-GC-CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 198976 0.7 0.402757
Target:  5'- gACaCG-GGCACCguguacGCGGCGcUGGUGGGg -3'
miRNA:   3'- -UG-GCgCCGUGGa-----CGCCGCaGCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.