miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 196594 0.66 0.639007
Target:  5'- uGCUGC-GCGCCgagagGCgacGGCGcUCGGaCGGGa -3'
miRNA:   3'- -UGGCGcCGUGGa----CG---CCGC-AGCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 36717 0.66 0.638078
Target:  5'- gGCCGCGagcggaggcGCGCgaGCGGCGgcacagcUCGGCccgauggucGGGa -3'
miRNA:   3'- -UGGCGC---------CGUGgaCGCCGC-------AGCCG---------CCC- -5'
30195 3' -65.1 NC_006273.1 + 41489 0.66 0.629722
Target:  5'- gGCCGUGGaaggaUUGacaGGCGUCGGCGugaGGa -3'
miRNA:   3'- -UGGCGCCgug--GACg--CCGCAGCCGC---CC- -5'
30195 3' -65.1 NC_006273.1 + 116978 0.66 0.629722
Target:  5'- aGCUGCGGCgGCUUG-GGCagcagCGGCGGc -3'
miRNA:   3'- -UGGCGCCG-UGGACgCCGca---GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 198272 0.66 0.629722
Target:  5'- gGCCuGCGGCguuACUUGCGGCGcuUCGa-GGGc -3'
miRNA:   3'- -UGG-CGCCG---UGGACGCCGC--AGCcgCCC- -5'
30195 3' -65.1 NC_006273.1 + 168204 0.66 0.629722
Target:  5'- uCUGCGcGUAC--GUGGCGUUGGCGGc -3'
miRNA:   3'- uGGCGC-CGUGgaCGCCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 185903 0.66 0.628793
Target:  5'- uACCGCGGCgacguggagaGCCUGuCGGCcGagGugaccaaGCGGGg -3'
miRNA:   3'- -UGGCGCCG----------UGGAC-GCCG-CagC-------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 65541 0.66 0.626936
Target:  5'- uCCGCGGUACCaccguccuacagcUGCGGCGaaggggcccugcCGGCccuGGGc -3'
miRNA:   3'- uGGCGCCGUGG-------------ACGCCGCa-----------GCCG---CCC- -5'
30195 3' -65.1 NC_006273.1 + 105166 0.66 0.624151
Target:  5'- -gCGCGGCGCC-GCGGCcucgcccagguagccGgagaCGGCGGu -3'
miRNA:   3'- ugGCGCCGUGGaCGCCG---------------Ca---GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 64250 0.66 0.620439
Target:  5'- cCCGCgGGCACggGCGuuGCGgCGGCGGc -3'
miRNA:   3'- uGGCG-CCGUGgaCGC--CGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 160825 0.66 0.620439
Target:  5'- --gGCGGCAUgCUGCGGCGaugcugUCGGUGa- -3'
miRNA:   3'- uggCGCCGUG-GACGCCGC------AGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 61744 0.66 0.620439
Target:  5'- gACCGCGaGCGCCgUGCGcGCcUUcGUGGGu -3'
miRNA:   3'- -UGGCGC-CGUGG-ACGC-CGcAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 81594 0.66 0.620439
Target:  5'- cGCagGCGGCGgCcGCGGcCG-CGGCGGa -3'
miRNA:   3'- -UGg-CGCCGUgGaCGCC-GCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 234468 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 39575 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 72581 0.66 0.611163
Target:  5'- aGCUGCGGCgACC-GCGGCugccGUUGGUGa- -3'
miRNA:   3'- -UGGCGCCG-UGGaCGCCG----CAGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 39824 0.66 0.611163
Target:  5'- uACaCGgGGCucaGCgUGUGGCG-CGGCGGc -3'
miRNA:   3'- -UG-GCgCCG---UGgACGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 1997 0.67 0.605603
Target:  5'- cGCCaGCGGCGa--GCGGCacggagacggaggccGcCGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGUggaCGCCG---------------CaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 196890 0.67 0.605603
Target:  5'- cGCCaGCGGCGa--GCGGCacggagacggaggccGcCGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGUggaCGCCG---------------CaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 234299 0.67 0.592655
Target:  5'- uGCCGCuacucggaggGGCGCCcgGCGGCcc--GCGGGg -3'
miRNA:   3'- -UGGCG----------CCGUGGa-CGCCGcagcCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.