miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 144648 0.67 0.592655
Target:  5'- aGCCGCGuGUGCUgaucgagGCGGCGUU-GCGGc -3'
miRNA:   3'- -UGGCGC-CGUGGa------CGCCGCAGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 39406 0.67 0.592655
Target:  5'- uGCCGCuacucggaggGGCGCCcgGCGGCcc--GCGGGg -3'
miRNA:   3'- -UGGCG----------CCGUGGa-CGCCGcagcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 234299 0.67 0.592655
Target:  5'- uGCCGCuacucggaggGGCGCCcgGCGGCcc--GCGGGg -3'
miRNA:   3'- -UGGCG----------CCGUGGa-CGCCGcagcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 122006 0.67 0.592655
Target:  5'- cGCCGCGGUGgCa-UGGCGUCGaGuCGGGc -3'
miRNA:   3'- -UGGCGCCGUgGacGCCGCAGC-C-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 160563 0.67 0.592655
Target:  5'- cCCGCGGCugguACgaGCGGUGggcucgaGGgGGGa -3'
miRNA:   3'- uGGCGCCG----UGgaCGCCGCag-----CCgCCC- -5'
30195 3' -65.1 NC_006273.1 + 116298 0.67 0.592655
Target:  5'- cCCGUGcGgACCcGCGG-GaCGGCGGGg -3'
miRNA:   3'- uGGCGC-CgUGGaCGCCgCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 192798 0.67 0.592655
Target:  5'- uGCCGagcaaGcGCACUUGCGGCGcgugaUCGGCa-- -3'
miRNA:   3'- -UGGCg----C-CGUGGACGCCGC-----AGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 89370 0.67 0.58712
Target:  5'- gGCCGCGGCagucgcuuagccaccACCUGgaCGGgGgggaccgggGGCGGGg -3'
miRNA:   3'- -UGGCGCCG---------------UGGAC--GCCgCag-------CCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 100787 0.67 0.583435
Target:  5'- -gCGCGGCugauguCUUGCGGgaaGgCGGUGGGg -3'
miRNA:   3'- ugGCGCCGu-----GGACGCCg--CaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 142183 0.67 0.583435
Target:  5'- cACCgGCGGCAgcgaccCCUcggacagcgugaGCGGCGUCcGCGGu -3'
miRNA:   3'- -UGG-CGCCGU------GGA------------CGCCGCAGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 163339 0.67 0.583435
Target:  5'- cACUGCu-CGCuCUGCGGCaGUCaGCGGGu -3'
miRNA:   3'- -UGGCGccGUG-GACGCCG-CAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 106084 0.67 0.583435
Target:  5'- gGCCGCGGUACCcGgGaGCcagaUGGUGGGu -3'
miRNA:   3'- -UGGCGCCGUGGaCgC-CGca--GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 197171 0.67 0.581594
Target:  5'- cGCCGCGGUuuccGCCgucuccggaugaGCGGcCG-CGGCGcGGg -3'
miRNA:   3'- -UGGCGCCG----UGGa-----------CGCC-GCaGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 38059 0.67 0.577916
Target:  5'- uGCuCGCGGUccagcucgggcagcaGCCgccgcGCGGCcUCGGCGGcGg -3'
miRNA:   3'- -UG-GCGCCG---------------UGGa----CGCCGcAGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 232952 0.67 0.577916
Target:  5'- uGCuCGCGGUccagcucgggcagcaGCCgccgcGCGGCcUCGGCGGcGg -3'
miRNA:   3'- -UG-GCGCCG---------------UGGa----CGCCGcAGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 19176 0.67 0.574243
Target:  5'- uGCCGCGcuccGUACaacgaaUGCGGCGUCgaauuaccgGGCGGc -3'
miRNA:   3'- -UGGCGC----CGUGg-----ACGCCGCAG---------CCGCCc -5'
30195 3' -65.1 NC_006273.1 + 43148 0.67 0.574243
Target:  5'- uACCGCguuaGGCACCgcGUGGCGUaccuCGGGg -3'
miRNA:   3'- -UGGCG----CCGUGGa-CGCCGCAgcc-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 167196 0.67 0.574243
Target:  5'- gGCCGCGGagGCCgGCGuaaacaGCGUCaGCGGc -3'
miRNA:   3'- -UGGCGCCg-UGGaCGC------CGCAGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 162827 0.67 0.573325
Target:  5'- aGCUGCGGgGCCUcaucgcaGCcuuGCGUCGGCacgccGGGa -3'
miRNA:   3'- -UGGCGCCgUGGA-------CGc--CGCAGCCG-----CCC- -5'
30195 3' -65.1 NC_006273.1 + 70816 0.67 0.565084
Target:  5'- cGCCaGCGGCcugGCCUuCGGCacgcUGGCGGGc -3'
miRNA:   3'- -UGG-CGCCG---UGGAcGCCGca--GCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.