miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 13 0.69 0.476323
Target:  5'- cACCgGCGGCGgucggggugugUCgGgGGCG-CGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGU-----------GGaCgCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 190 0.68 0.528883
Target:  5'- gUCGCGG-GCgUGUGccggguGUGUCGGCGGGg -3'
miRNA:   3'- uGGCGCCgUGgACGC------CGCAGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 1201 0.66 0.648287
Target:  5'- gGCCaugGGCGCCgUGUGGCGcgCGGCGu- -3'
miRNA:   3'- -UGGcg-CCGUGG-ACGCCGCa-GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 1935 0.69 0.451028
Target:  5'- -gCGCGGUGCUgcccgcGCGGUGgcuggguugcgCGGCGGGg -3'
miRNA:   3'- ugGCGCCGUGGa-----CGCCGCa----------GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 1997 0.67 0.605603
Target:  5'- cGCCaGCGGCGa--GCGGCacggagacggaggccGcCGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGUggaCGCCG---------------CaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 2061 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 2190 0.71 0.350763
Target:  5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3'
miRNA:   3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 2226 0.72 0.323266
Target:  5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 14209 0.66 0.666809
Target:  5'- uCCGCGGCGCUUgggaGCGGgGUgaCGGUGu- -3'
miRNA:   3'- uGGCGCCGUGGA----CGCCgCA--GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 15112 0.69 0.466965
Target:  5'- cGCCGUGGUAUgUGCuaGGCGUgacgggacguccgCGGcCGGGa -3'
miRNA:   3'- -UGGCGCCGUGgACG--CCGCA-------------GCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 16648 0.71 0.357892
Target:  5'- uGCCGCuGGUACCUGCugGGCG-CcGUGGGc -3'
miRNA:   3'- -UGGCG-CCGUGGACG--CCGCaGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 18805 0.68 0.493572
Target:  5'- gACCGCGGaUugCgcgGCGaGUGUCGGuuGGa -3'
miRNA:   3'- -UGGCGCC-GugGa--CGC-CGCAGCCgcCC- -5'
30195 3' -65.1 NC_006273.1 + 19176 0.67 0.574243
Target:  5'- uGCCGCGcuccGUACaacgaaUGCGGCGUCgaauuaccgGGCGGc -3'
miRNA:   3'- -UGGCGC----CGUGg-----ACGCCGCAG---------CCGCCc -5'
30195 3' -65.1 NC_006273.1 + 22124 0.69 0.484911
Target:  5'- uGCCGCGGgagaaGCCucUGCGGUagCGGCGGcGg -3'
miRNA:   3'- -UGGCGCCg----UGG--ACGCCGcaGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 29140 0.66 0.648287
Target:  5'- --gGCGGC-CUUGaCGGCGUUGGCa-- -3'
miRNA:   3'- uggCGCCGuGGAC-GCCGCAGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 30678 0.72 0.303719
Target:  5'- cCUGCGGCcgGCC-GCGGUGcCGGCGGc -3'
miRNA:   3'- uGGCGCCG--UGGaCGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 30759 0.69 0.476323
Target:  5'- cCCGagaaCGGCGCCgGCGGCGgUGGCGa- -3'
miRNA:   3'- uGGC----GCCGUGGaCGCCGCaGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 31016 0.66 0.648287
Target:  5'- aGCCuaCGGCACCUGgGGUaaCGaGCGGa -3'
miRNA:   3'- -UGGc-GCCGUGGACgCCGcaGC-CGCCc -5'
30195 3' -65.1 NC_006273.1 + 32749 0.73 0.2912
Target:  5'- gGCCGCGcuccaGCAaCUGCGGCagcgaGUCGGCGGc -3'
miRNA:   3'- -UGGCGC-----CGUgGACGCCG-----CAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 33233 0.73 0.279089
Target:  5'- cACCGagGGCcCCgggGCGGCGacgaCGGCGGGu -3'
miRNA:   3'- -UGGCg-CCGuGGa--CGCCGCa---GCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.