miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 33273 0.68 0.53696
Target:  5'- uCCaGCGGgGCCuUGCGGCGgcagcggUUGGCGuGGu -3'
miRNA:   3'- uGG-CGCCgUGG-ACGCCGC-------AGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 33411 0.68 0.502303
Target:  5'- -aCGC-GCACC-GCcucgGGCGUCGGCGGc -3'
miRNA:   3'- ugGCGcCGUGGaCG----CCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 36717 0.66 0.638078
Target:  5'- gGCCGCGagcggaggcGCGCgaGCGGCGgcacagcUCGGCccgauggucGGGa -3'
miRNA:   3'- -UGGCGC---------CGUGgaCGCCGC-------AGCCG---------CCC- -5'
30195 3' -65.1 NC_006273.1 + 38059 0.67 0.577916
Target:  5'- uGCuCGCGGUccagcucgggcagcaGCCgccgcGCGGCcUCGGCGGcGg -3'
miRNA:   3'- -UG-GCGCCG---------------UGGa----CGCCGcAGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 38231 0.68 0.517297
Target:  5'- aACCGCGGCGCCggaggaaacggggacCGGCaacgaCGGCGGu -3'
miRNA:   3'- -UGGCGCCGUGGac-------------GCCGca---GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 39170 0.74 0.256075
Target:  5'- gGCUGCGGCGgugcuCCgaGCGGCGUU-GCGGGg -3'
miRNA:   3'- -UGGCGCCGU-----GGa-CGCCGCAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 39345 0.69 0.476323
Target:  5'- uCCGCGGCACgauggacgacgaCgagGCGGCGcuaccCGGCGaGGa -3'
miRNA:   3'- uGGCGCCGUG------------Ga--CGCCGCa----GCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 39406 0.67 0.592655
Target:  5'- uGCCGCuacucggaggGGCGCCcgGCGGCcc--GCGGGg -3'
miRNA:   3'- -UGGCG----------CCGUGGa-CGCCGcagcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 39575 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 39824 0.66 0.611163
Target:  5'- uACaCGgGGCucaGCgUGUGGCG-CGGCGGc -3'
miRNA:   3'- -UG-GCgCCG---UGgACGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 41489 0.66 0.629722
Target:  5'- gGCCGUGGaaggaUUGacaGGCGUCGGCGugaGGa -3'
miRNA:   3'- -UGGCGCCgug--GACg--CCGCAGCCGC---CC- -5'
30195 3' -65.1 NC_006273.1 + 43148 0.67 0.574243
Target:  5'- uACCGCguuaGGCACCgcGUGGCGUaccuCGGGg -3'
miRNA:   3'- -UGGCG----CCGUGGa-CGCCGCAgcc-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 44790 0.71 0.350763
Target:  5'- cGCCGCGGCcgaUG-GGCGcCGGCGGa -3'
miRNA:   3'- -UGGCGCCGuggACgCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 47391 0.68 0.502303
Target:  5'- -aCGCGGUugCcgGCGGagGUgcUGGCGGGg -3'
miRNA:   3'- ugGCGCCGugGa-CGCCg-CA--GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 47829 0.68 0.535161
Target:  5'- uUCGCGG-ACCUGUcgucgcugggccucGGCGccguaCGGCGGGa -3'
miRNA:   3'- uGGCGCCgUGGACG--------------CCGCa----GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 54544 0.66 0.657556
Target:  5'- aGCCgGCGGUGCUguugGCGGUG-CGGCa-- -3'
miRNA:   3'- -UGG-CGCCGUGGa---CGCCGCaGCCGccc -5'
30195 3' -65.1 NC_006273.1 + 57696 0.7 0.395035
Target:  5'- aGCCGCaGCGCCa---GCGUCGGCGGc -3'
miRNA:   3'- -UGGCGcCGUGGacgcCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 61474 0.68 0.511101
Target:  5'- cGCCGUGaGCGCCU--GGUGaUCGGCGuGGu -3'
miRNA:   3'- -UGGCGC-CGUGGAcgCCGC-AGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 61744 0.66 0.620439
Target:  5'- gACCGCGaGCGCCgUGCGcGCcUUcGUGGGu -3'
miRNA:   3'- -UGGCGC-CGUGG-ACGC-CGcAGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 62041 0.82 0.067775
Target:  5'- aGCgGCGGCACC-GCGGCGgCGGCGGa -3'
miRNA:   3'- -UGgCGCCGUGGaCGCCGCaGCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.