miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 235021 0.68 0.528883
Target:  5'- gUCGCGG-GCgUGUGccggguGUGUCGGCGGGg -3'
miRNA:   3'- uGGCGCCgUGgACGC------CGCAGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 234844 0.69 0.476323
Target:  5'- cACCgGCGGCGgucggggugugUCgGgGGCG-CGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGU-----------GGaCgCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 234468 0.66 0.611163
Target:  5'- cCCGCGGCcgcgACCgagggGCGGgGggcgCGGCGa- -3'
miRNA:   3'- uGGCGCCG----UGGa----CGCCgCa---GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 234299 0.67 0.592655
Target:  5'- uGCCGCuacucggaggGGCGCCcgGCGGCcc--GCGGGg -3'
miRNA:   3'- -UGGCG----------CCGUGGa-CGCCGcagcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 233885 0.66 0.644575
Target:  5'- uCCGCGGCgucgagcuccaucuGCgUGCGGUguuguuuGUCGGCGu- -3'
miRNA:   3'- uGGCGCCG--------------UGgACGCCG-------CAGCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 232952 0.67 0.577916
Target:  5'- uGCuCGCGGUccagcucgggcagcaGCCgccgcGCGGCcUCGGCGGcGg -3'
miRNA:   3'- -UG-GCGCCG---------------UGGa----CGCCGcAGCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 232214 0.69 0.484911
Target:  5'- gUCGCGGCACaaucuggcaGCGGgGUCGGgguaGGGu -3'
miRNA:   3'- uGGCGCCGUGga-------CGCCgCAGCCg---CCC- -5'
30195 3' -65.1 NC_006273.1 + 230448 0.68 0.510218
Target:  5'- gAUCGCuGCugCUcCGGCGUucuccagaagcccCGGCGGGc -3'
miRNA:   3'- -UGGCGcCGugGAcGCCGCA-------------GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 218192 0.71 0.379882
Target:  5'- -gCGUGGCAUggGCGGCGgccgaCGGCGGa -3'
miRNA:   3'- ugGCGCCGUGgaCGCCGCa----GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 214948 0.66 0.639007
Target:  5'- aACCGUGGCACCguagGCGGaacagcuGcCaGCGGa -3'
miRNA:   3'- -UGGCGCCGUGGa---CGCCg------CaGcCGCCc -5'
30195 3' -65.1 NC_006273.1 + 213678 0.71 0.364395
Target:  5'- aGCCGCGcCgacaaagGCCUGCGGCGaCGGCuGGc -3'
miRNA:   3'- -UGGCGCcG-------UGGACGCCGCaGCCGcCC- -5'
30195 3' -65.1 NC_006273.1 + 211157 0.69 0.462742
Target:  5'- cCCGCGGUucuaacagGCUUGauugguggagacggcCGGCG-CGGCGGGu -3'
miRNA:   3'- uGGCGCCG--------UGGAC---------------GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 204715 0.68 0.549607
Target:  5'- cACCGCGGCcggccgcaggaagccGCCcgGC-GCGUCGucuguguGCGGGa -3'
miRNA:   3'- -UGGCGCCG---------------UGGa-CGcCGCAGC-------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 198976 0.7 0.402757
Target:  5'- gACaCG-GGCACCguguacGCGGCGcUGGUGGGg -3'
miRNA:   3'- -UG-GCgCCGUGGa-----CGCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 198272 0.66 0.629722
Target:  5'- gGCCuGCGGCguuACUUGCGGCGcuUCGa-GGGc -3'
miRNA:   3'- -UGG-CGCCG---UGGACGCCGC--AGCcgCCC- -5'
30195 3' -65.1 NC_006273.1 + 197171 0.67 0.581594
Target:  5'- cGCCGCGGUuuccGCCgucuccggaugaGCGGcCG-CGGCGcGGg -3'
miRNA:   3'- -UGGCGCCG----UGGa-----------CGCC-GCaGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 197119 0.72 0.323266
Target:  5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 197083 0.71 0.350763
Target:  5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3'
miRNA:   3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 196985 0.66 0.666809
Target:  5'- uGCCGCcaccGCAgCgGCGGCGacggaCGGCGGcGg -3'
miRNA:   3'- -UGGCGc---CGUgGaCGCCGCa----GCCGCC-C- -5'
30195 3' -65.1 NC_006273.1 + 196954 0.66 0.642719
Target:  5'- aGCCGUGGggucugcugugacuaUACCUccGCagccguacggaGGCGcCGGCGGGa -3'
miRNA:   3'- -UGGCGCC---------------GUGGA--CG-----------CCGCaGCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.