Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30195 | 3' | -65.1 | NC_006273.1 | + | 218192 | 0.71 | 0.379882 |
Target: 5'- -gCGUGGCAUggGCGGCGgccgaCGGCGGa -3' miRNA: 3'- ugGCGCCGUGgaCGCCGCa----GCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 188875 | 0.73 | 0.279089 |
Target: 5'- uCCGCGGUggcuUUUGUGGCGUCGGCguuuucGGGa -3' miRNA: 3'- uGGCGCCGu---GGACGCCGCAGCCG------CCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 32749 | 0.73 | 0.2912 |
Target: 5'- gGCCGCGcuccaGCAaCUGCGGCagcgaGUCGGCGGc -3' miRNA: 3'- -UGGCGC-----CGUgGACGCCG-----CAGCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 138160 | 0.72 | 0.297409 |
Target: 5'- gGCgGCGGCcacgGCCUGCGGgca-GGCGGGu -3' miRNA: 3'- -UGgCGCCG----UGGACGCCgcagCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 167322 | 0.72 | 0.323266 |
Target: 5'- aGCgGCGGCAgCgGCGGCcaCGGCGGc -3' miRNA: 3'- -UGgCGCCGUgGaCGCCGcaGCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 197119 | 0.72 | 0.323266 |
Target: 5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3' miRNA: 3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 197083 | 0.71 | 0.350763 |
Target: 5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3' miRNA: 3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 213678 | 0.71 | 0.364395 |
Target: 5'- aGCCGCGcCgacaaagGCCUGCGGCGaCGGCuGGc -3' miRNA: 3'- -UGGCGCcG-------UGGACGCCGCaGCCGcCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 167656 | 0.71 | 0.365122 |
Target: 5'- aGCgGCGGCGCaacgGCGGgGUCGGCc-- -3' miRNA: 3'- -UGgCGCCGUGga--CGCCgCAGCCGccc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 33233 | 0.73 | 0.279089 |
Target: 5'- cACCGagGGCcCCgggGCGGCGacgaCGGCGGGu -3' miRNA: 3'- -UGGCg-CCGuGGa--CGCCGCa---GCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 188370 | 0.73 | 0.273185 |
Target: 5'- cACCGCGGuCAUCcaagucggGCGGCGUCGG-GGa -3' miRNA: 3'- -UGGCGCC-GUGGa-------CGCCGCAGCCgCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 87748 | 0.73 | 0.273185 |
Target: 5'- gGCUGCGGCgGCCguugucGCGGCGUuugcUGGCGGu -3' miRNA: 3'- -UGGCGCCG-UGGa-----CGCCGCA----GCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 62041 | 0.82 | 0.067775 |
Target: 5'- aGCgGCGGCACC-GCGGCGgCGGCGGa -3' miRNA: 3'- -UGgCGCCGUGGaCGCCGCaGCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 162370 | 0.78 | 0.13262 |
Target: 5'- gGCgGCGGCGCUagugGUGGCGguggcggCGGCGGGa -3' miRNA: 3'- -UGgCGCCGUGGa---CGCCGCa------GCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 189842 | 0.78 | 0.13262 |
Target: 5'- cGCCggGUGGCAUCUGCGGCa-UGGCGGGg -3' miRNA: 3'- -UGG--CGCCGUGGACGCCGcaGCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 137399 | 0.76 | 0.187597 |
Target: 5'- cGCCGCGGaCGCCUGCGaCGUUGGCu-- -3' miRNA: 3'- -UGGCGCC-GUGGACGCcGCAGCCGccc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 73765 | 0.74 | 0.245163 |
Target: 5'- gGCaGCGGCGCCgccaGCGGCGaccaUGGUGGGa -3' miRNA: 3'- -UGgCGCCGUGGa---CGCCGCa---GCCGCCC- -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 144415 | 0.74 | 0.247314 |
Target: 5'- uGCC-CGGCGCCgcgGCGGCGgacgguucggguggCGGCGGc -3' miRNA: 3'- -UGGcGCCGUGGa--CGCCGCa-------------GCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 99500 | 0.74 | 0.25057 |
Target: 5'- cUUGCGGUACCggugGUGGCGgCGGCGGc -3' miRNA: 3'- uGGCGCCGUGGa---CGCCGCaGCCGCCc -5' |
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30195 | 3' | -65.1 | NC_006273.1 | + | 39170 | 0.74 | 0.256075 |
Target: 5'- gGCUGCGGCGgugcuCCgaGCGGCGUU-GCGGGg -3' miRNA: 3'- -UGGCGCCGU-----GGa-CGCCGCAGcCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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