miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 3' -65.1 NC_006273.1 + 94714 0.8 0.097404
Target:  5'- cGCCGuCGuCGCCUGCGGCGUUGGCgcaGGGa -3'
miRNA:   3'- -UGGC-GCcGUGGACGCCGCAGCCG---CCC- -5'
30195 3' -65.1 NC_006273.1 + 196800 0.69 0.459379
Target:  5'- aGCCGCaGGCGCuCUGCca-GUUGGCGaGGg -3'
miRNA:   3'- -UGGCG-CCGUG-GACGccgCAGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 13 0.69 0.476323
Target:  5'- cACCgGCGGCGgucggggugugUCgGgGGCG-CGGCGGGg -3'
miRNA:   3'- -UGG-CGCCGU-----------GGaCgCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 14209 0.66 0.666809
Target:  5'- uCCGCGGCGCUUgggaGCGGgGUgaCGGUGu- -3'
miRNA:   3'- uGGCGCCGUGGA----CGCCgCA--GCCGCcc -5'
30195 3' -65.1 NC_006273.1 + 30678 0.72 0.303719
Target:  5'- cCUGCGGCcgGCC-GCGGUGcCGGCGGc -3'
miRNA:   3'- uGGCGCCG--UGGaCGCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 2226 0.72 0.323266
Target:  5'- gAUgGCGGguCCgGCGGCGUCGG-GGa -3'
miRNA:   3'- -UGgCGCCguGGaCGCCGCAGCCgCCc -5'
30195 3' -65.1 NC_006273.1 + 164450 0.71 0.343736
Target:  5'- gGCCGCGGcCGCUcgaugacgaUGuCGGCG-CGGCGGc -3'
miRNA:   3'- -UGGCGCC-GUGG---------AC-GCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 2190 0.71 0.350763
Target:  5'- aGCgGCGGCGCC-GaCGGUGaUGGUGGGu -3'
miRNA:   3'- -UGgCGCCGUGGaC-GCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 147392 0.7 0.38741
Target:  5'- gACCuGuCGGCGCuCUucgcgcccaGUGGCGUCGGCGcGGc -3'
miRNA:   3'- -UGG-C-GCCGUG-GA---------CGCCGCAGCCGC-CC- -5'
30195 3' -65.1 NC_006273.1 + 162252 0.69 0.459379
Target:  5'- aGCCacCGGCGCaguuUGCGGCGcagacgUCGGCGGu -3'
miRNA:   3'- -UGGc-GCCGUGg---ACGCCGC------AGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 198976 0.7 0.402757
Target:  5'- gACaCG-GGCACCguguacGCGGCGcUGGUGGGg -3'
miRNA:   3'- -UG-GCgCCGUGGa-----CGCCGCaGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 16648 0.71 0.357892
Target:  5'- uGCCGCuGGUACCUGCugGGCG-CcGUGGGc -3'
miRNA:   3'- -UGGCG-CCGUGGACG--CCGCaGcCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 147537 0.77 0.159798
Target:  5'- -aCGcCGGCgaagacgagGCUgGCGGCGUCGGCGGGa -3'
miRNA:   3'- ugGC-GCCG---------UGGaCGCCGCAGCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 162206 0.7 0.426487
Target:  5'- gGCCGCGGUGCgCUGCaGCcGgaggaagCGGCGGu -3'
miRNA:   3'- -UGGCGCCGUG-GACGcCG-Ca------GCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 100458 0.74 0.229521
Target:  5'- -aCGCGGCGCC---GGUGUCGGCGGa -3'
miRNA:   3'- ugGCGCCGUGGacgCCGCAGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 44790 0.71 0.350763
Target:  5'- cGCCGCGGCcgaUG-GGCGcCGGCGGa -3'
miRNA:   3'- -UGGCGCCGuggACgCCGCaGCCGCCc -5'
30195 3' -65.1 NC_006273.1 + 1935 0.69 0.451028
Target:  5'- -gCGCGGUGCUgcccgcGCGGUGgcuggguugcgCGGCGGGg -3'
miRNA:   3'- ugGCGCCGUGGa-----CGCCGCa----------GCCGCCC- -5'
30195 3' -65.1 NC_006273.1 + 15112 0.69 0.466965
Target:  5'- cGCCGUGGUAUgUGCuaGGCGUgacgggacguccgCGGcCGGGa -3'
miRNA:   3'- -UGGCGCCGUGgACG--CCGCA-------------GCC-GCCC- -5'
30195 3' -65.1 NC_006273.1 + 162999 0.74 0.245163
Target:  5'- gACgGCGGCAgCUGCGGCGguaggacacGCGGGc -3'
miRNA:   3'- -UGgCGCCGUgGACGCCGCagc------CGCCC- -5'
30195 3' -65.1 NC_006273.1 + 141164 0.71 0.343736
Target:  5'- uGCCGCGGa--CUGCGcCGgggggCGGCGGGc -3'
miRNA:   3'- -UGGCGCCgugGACGCcGCa----GCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.