miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30195 5' -57.9 NC_006273.1 + 4922 0.66 0.898091
Target:  5'- uCGCCCGCcgGGGCUUCuGgagaacgCCGGAg -3'
miRNA:   3'- -GUGGGCGuaCUCGGGGuCaa-----GGUCUa -5'
30195 5' -57.9 NC_006273.1 + 163859 0.66 0.898091
Target:  5'- cCGCCgGCGaGGGCCCUcGUUCCucGAg -3'
miRNA:   3'- -GUGGgCGUaCUCGGGGuCAAGGu-CUa -5'
30195 5' -57.9 NC_006273.1 + 154460 0.66 0.898091
Target:  5'- aGCCCGUc-GAGCUCUGGUUCCgccAGAa -3'
miRNA:   3'- gUGGGCGuaCUCGGGGUCAAGG---UCUa -5'
30195 5' -57.9 NC_006273.1 + 30113 0.66 0.898091
Target:  5'- aACUCGgcCGUGAGCgCCAGgcuagCCAGAUc -3'
miRNA:   3'- gUGGGC--GUACUCGgGGUCaa---GGUCUA- -5'
30195 5' -57.9 NC_006273.1 + 51652 0.66 0.887712
Target:  5'- gCACCCGUugcgccggagcgugaGaaggcUGAGCCCCGGUggcCUGGAUg -3'
miRNA:   3'- -GUGGGCG---------------U-----ACUCGGGGUCAa--GGUCUA- -5'
30195 5' -57.9 NC_006273.1 + 76691 0.66 0.885031
Target:  5'- gACCCGCGUGuGCCCUgccucacggcuGGU-CCGuGAUg -3'
miRNA:   3'- gUGGGCGUACuCGGGG-----------UCAaGGU-CUA- -5'
30195 5' -57.9 NC_006273.1 + 213328 0.66 0.871119
Target:  5'- gACCCGUcgucAUGGGCUCCAcaaCCAGAg -3'
miRNA:   3'- gUGGGCG----UACUCGGGGUcaaGGUCUa -5'
30195 5' -57.9 NC_006273.1 + 197499 0.67 0.863856
Target:  5'- gACCUGCGcGAGgCCCGGcgCCAGc- -3'
miRNA:   3'- gUGGGCGUaCUCgGGGUCaaGGUCua -5'
30195 5' -57.9 NC_006273.1 + 198638 0.67 0.856394
Target:  5'- cCACCCGCcgGAGC-CCGGUcugagcUCCGa-- -3'
miRNA:   3'- -GUGGGCGuaCUCGgGGUCA------AGGUcua -5'
30195 5' -57.9 NC_006273.1 + 206321 0.67 0.832875
Target:  5'- cUACCCGCGaccgGGGCCCagAGggCUAGAa -3'
miRNA:   3'- -GUGGGCGUa---CUCGGGg-UCaaGGUCUa -5'
30195 5' -57.9 NC_006273.1 + 185352 0.67 0.82468
Target:  5'- uGCCCGCAacUGAGCgUCCGGUUUuuuuaCAGGUc -3'
miRNA:   3'- gUGGGCGU--ACUCG-GGGUCAAG-----GUCUA- -5'
30195 5' -57.9 NC_006273.1 + 122633 0.68 0.781357
Target:  5'- -cCCCGCuUGAGCCgaUAGUaCCAGAUa -3'
miRNA:   3'- guGGGCGuACUCGGg-GUCAaGGUCUA- -5'
30195 5' -57.9 NC_006273.1 + 94487 0.7 0.686242
Target:  5'- -cCCCGCAccgGGGUCCCGGUUCCc--- -3'
miRNA:   3'- guGGGCGUa--CUCGGGGUCAAGGucua -5'
30195 5' -57.9 NC_006273.1 + 189346 1.05 0.004958
Target:  5'- cCACCCGCAUGAGCCCCAGUUCCAGAUc -3'
miRNA:   3'- -GUGGGCGUACUCGGGGUCAAGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.