Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30195 | 5' | -57.9 | NC_006273.1 | + | 189346 | 1.05 | 0.004958 |
Target: 5'- cCACCCGCAUGAGCCCCAGUUCCAGAUc -3' miRNA: 3'- -GUGGGCGUACUCGGGGUCAAGGUCUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 94487 | 0.7 | 0.686242 |
Target: 5'- -cCCCGCAccgGGGUCCCGGUUCCc--- -3' miRNA: 3'- guGGGCGUa--CUCGGGGUCAAGGucua -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 122633 | 0.68 | 0.781357 |
Target: 5'- -cCCCGCuUGAGCCgaUAGUaCCAGAUa -3' miRNA: 3'- guGGGCGuACUCGGg-GUCAaGGUCUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 185352 | 0.67 | 0.82468 |
Target: 5'- uGCCCGCAacUGAGCgUCCGGUUUuuuuaCAGGUc -3' miRNA: 3'- gUGGGCGU--ACUCG-GGGUCAAG-----GUCUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 206321 | 0.67 | 0.832875 |
Target: 5'- cUACCCGCGaccgGGGCCCagAGggCUAGAa -3' miRNA: 3'- -GUGGGCGUa---CUCGGGg-UCaaGGUCUa -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 198638 | 0.67 | 0.856394 |
Target: 5'- cCACCCGCcgGAGC-CCGGUcugagcUCCGa-- -3' miRNA: 3'- -GUGGGCGuaCUCGgGGUCA------AGGUcua -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 197499 | 0.67 | 0.863856 |
Target: 5'- gACCUGCGcGAGgCCCGGcgCCAGc- -3' miRNA: 3'- gUGGGCGUaCUCgGGGUCaaGGUCua -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 213328 | 0.66 | 0.871119 |
Target: 5'- gACCCGUcgucAUGGGCUCCAcaaCCAGAg -3' miRNA: 3'- gUGGGCG----UACUCGGGGUcaaGGUCUa -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 76691 | 0.66 | 0.885031 |
Target: 5'- gACCCGCGUGuGCCCUgccucacggcuGGU-CCGuGAUg -3' miRNA: 3'- gUGGGCGUACuCGGGG-----------UCAaGGU-CUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 51652 | 0.66 | 0.887712 |
Target: 5'- gCACCCGUugcgccggagcgugaGaaggcUGAGCCCCGGUggcCUGGAUg -3' miRNA: 3'- -GUGGGCG---------------U-----ACUCGGGGUCAa--GGUCUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 30113 | 0.66 | 0.898091 |
Target: 5'- aACUCGgcCGUGAGCgCCAGgcuagCCAGAUc -3' miRNA: 3'- gUGGGC--GUACUCGgGGUCaa---GGUCUA- -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 154460 | 0.66 | 0.898091 |
Target: 5'- aGCCCGUc-GAGCUCUGGUUCCgccAGAa -3' miRNA: 3'- gUGGGCGuaCUCGGGGUCAAGG---UCUa -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 163859 | 0.66 | 0.898091 |
Target: 5'- cCGCCgGCGaGGGCCCUcGUUCCucGAg -3' miRNA: 3'- -GUGGgCGUaCUCGGGGuCAAGGu-CUa -5' |
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30195 | 5' | -57.9 | NC_006273.1 | + | 4922 | 0.66 | 0.898091 |
Target: 5'- uCGCCCGCcgGGGCUUCuGgagaacgCCGGAg -3' miRNA: 3'- -GUGGGCGuaCUCGGGGuCaa-----GGUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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