miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 3' -53.8 NC_006273.1 + 124033 0.65 0.989267
Target:  5'- uGGAucACGCcgcugaaCCCAgcGGCGcgGCCGCGc -3'
miRNA:   3'- -CCU--UGCG-------GGGUaaCCGUaaCGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 93803 0.66 0.988011
Target:  5'- cGGGGCGaauUUCGguuguuagGGCGUUGCCACGc -3'
miRNA:   3'- -CCUUGCg--GGGUaa------CCGUAACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 137975 0.66 0.986485
Target:  5'- cGAGCGCCCCccgauGUAggGCCGCu- -3'
miRNA:   3'- cCUUGCGGGGuaac-CGUaaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 131977 0.66 0.984814
Target:  5'- uGGAACGCuCCCuguccGGC-UUGUUACGu -3'
miRNA:   3'- -CCUUGCG-GGGuaa--CCGuAACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 46404 0.66 0.982991
Target:  5'- aGGGAUcgcgaGCCCCAUcgGGCcc-GCCACu- -3'
miRNA:   3'- -CCUUG-----CGGGGUAa-CCGuaaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 220526 0.66 0.982991
Target:  5'- --cGCGCCCUuagGGUAUcGUCGCGGa -3'
miRNA:   3'- ccuUGCGGGGuaaCCGUAaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 145870 0.66 0.981006
Target:  5'- cGGAgguGCGCCUCAagaGCA--GCCGCGAc -3'
miRNA:   3'- -CCU---UGCGGGGUaacCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 193577 0.67 0.978854
Target:  5'- uGGGAUgugGCUCUGUUGGaagUGCCGCGu -3'
miRNA:   3'- -CCUUG---CGGGGUAACCguaACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 33799 0.67 0.978854
Target:  5'- uGGAG-GCCagguaCA-UGGCGUaGCCGCGAc -3'
miRNA:   3'- -CCUUgCGGg----GUaACCGUAaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93301 0.67 0.977479
Target:  5'- cGGcAGCGCaagCCGUgguaaccgucgccgcUGGCGgcgcUGCCGCGAg -3'
miRNA:   3'- -CC-UUGCGg--GGUA---------------ACCGUa---ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 142066 0.67 0.977479
Target:  5'- cGGcAGCGCCgCCAgcGGCgacgGUuaccacggcuugcgcUGCCGCGAa -3'
miRNA:   3'- -CC-UUGCGG-GGUaaCCG----UA---------------ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 229540 0.67 0.976526
Target:  5'- aGGAGgGCCgCCaAUUGGCGgcgacagaUGCgGCGGu -3'
miRNA:   3'- -CCUUgCGG-GG-UAACCGUa-------ACGgUGCU- -5'
30196 3' -53.8 NC_006273.1 + 114437 0.67 0.974015
Target:  5'- -aGACGCCCCGcgucaccggcGGCGgcGCCAUGGc -3'
miRNA:   3'- ccUUGCGGGGUaa--------CCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 144051 0.67 0.974015
Target:  5'- uGGugauCGCUCCucuGUUGGCGggGCuCACGGu -3'
miRNA:   3'- -CCuu--GCGGGG---UAACCGUaaCG-GUGCU- -5'
30196 3' -53.8 NC_006273.1 + 140225 0.67 0.971315
Target:  5'- gGGAccACGCCCag--GGCcagcaaGCCGCGAc -3'
miRNA:   3'- -CCU--UGCGGGguaaCCGuaa---CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 17689 0.67 0.971315
Target:  5'- cGGcGCGUCCCAcccccugGGCcaccaGCCGCGAu -3'
miRNA:   3'- -CCuUGCGGGGUaa-----CCGuaa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93571 0.67 0.971315
Target:  5'- aGGcGACGCCCCGUaggGGCGgaGCCuaGCu- -3'
miRNA:   3'- -CC-UUGCGGGGUAa--CCGUaaCGG--UGcu -5'
30196 3' -53.8 NC_006273.1 + 175286 0.67 0.971315
Target:  5'- uGGAAaGuCCCUAUUGGCGUUaCUAUGGg -3'
miRNA:   3'- -CCUUgC-GGGGUAACCGUAAcGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 193004 0.67 0.968419
Target:  5'- gGGAugGCCUCGUgcuCAccGCCGCGGa -3'
miRNA:   3'- -CCUugCGGGGUAaccGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 156871 0.68 0.965321
Target:  5'- -cGGCGCCCgGUguccgGGCGgcGCCGCa- -3'
miRNA:   3'- ccUUGCGGGgUAa----CCGUaaCGGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.