Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 190482 | 1.11 | 0.005144 |
Target: 5'- gGGAACGCCCCAUUGGCAUUGCCACGAa -3' miRNA: 3'- -CCUUGCGGGGUAACCGUAACGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 94120 | 0.76 | 0.623617 |
Target: 5'- gGGAGCgcgaGCCCCGUgccgGGCAUggGUCGCGGc -3' miRNA: 3'- -CCUUG----CGGGGUAa---CCGUAa-CGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 43573 | 0.75 | 0.674026 |
Target: 5'- uGGAGCaGCgCCGUaGGCAagUGCCGCGGc -3' miRNA: 3'- -CCUUG-CGgGGUAaCCGUa-ACGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 80243 | 0.73 | 0.761922 |
Target: 5'- gGGcGCGgCCCuc-GGCAUUaGCCACGAa -3' miRNA: 3'- -CCuUGCgGGGuaaCCGUAA-CGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 152910 | 0.73 | 0.798458 |
Target: 5'- cGGugGCCuCCGUggucgaaGGCGUUGCCACc- -3' miRNA: 3'- cCUugCGG-GGUAa------CCGUAACGGUGcu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 103018 | 0.72 | 0.815881 |
Target: 5'- cGGAcgaaACGCCgCGgcGGCAgcgGCCGCGGc -3' miRNA: 3'- -CCU----UGCGGgGUaaCCGUaa-CGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 93021 | 0.71 | 0.871363 |
Target: 5'- cGGAACGCggCCCg--GGCccgaUGCCACGGc -3' miRNA: 3'- -CCUUGCG--GGGuaaCCGua--ACGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 156688 | 0.7 | 0.898614 |
Target: 5'- gGGAaccGCGCCuCCGgcGGCggUGcCCGCGGa -3' miRNA: 3'- -CCU---UGCGG-GGUaaCCGuaAC-GGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 48578 | 0.7 | 0.910902 |
Target: 5'- aGGGGCGgCaugCCGUUGGCGgcGCCGgGAa -3' miRNA: 3'- -CCUUGCgG---GGUAACCGUaaCGGUgCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 133000 | 0.7 | 0.916702 |
Target: 5'- aGGAGCGUCuagcgCCGUUGuuGCAgagUGCCACGc -3' miRNA: 3'- -CCUUGCGG-----GGUAAC--CGUa--ACGGUGCu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 79050 | 0.69 | 0.92227 |
Target: 5'- uGGGcccacGCGCCaCCAgagccugcGGCGUcagGCCACGAa -3' miRNA: 3'- -CCU-----UGCGG-GGUaa------CCGUAa--CGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 152859 | 0.69 | 0.92227 |
Target: 5'- uGGGCGCCgcgggaaaggCCGUUGGCGUaGCCAUu- -3' miRNA: 3'- cCUUGCGG----------GGUAACCGUAaCGGUGcu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 89595 | 0.69 | 0.92227 |
Target: 5'- uGGGugGCCUCGcggUGGC--UGCCGCu- -3' miRNA: 3'- -CCUugCGGGGUa--ACCGuaACGGUGcu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 167159 | 0.69 | 0.942216 |
Target: 5'- uGGcguUGCCgCCGUUGGUg--GCCACGGc -3' miRNA: 3'- -CCuu-GCGG-GGUAACCGuaaCGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 44340 | 0.69 | 0.942216 |
Target: 5'- -cGACGCaCCAUUGGCAcgcUGUCACGc -3' miRNA: 3'- ccUUGCGgGGUAACCGUa--ACGGUGCu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 118156 | 0.69 | 0.942216 |
Target: 5'- gGGAacgcGCGCCCCAgccgccGGCGUggcgGCCugacuGCGGc -3' miRNA: 3'- -CCU----UGCGGGGUaa----CCGUAa---CGG-----UGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 134034 | 0.68 | 0.954377 |
Target: 5'- cGGccgcCGCCUgGUUGGUGUUGCCcuccacgGCGAu -3' miRNA: 3'- -CCuu--GCGGGgUAACCGUAACGG-------UGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 169672 | 0.68 | 0.954763 |
Target: 5'- aGGAcgGCGCCg---UGGcCGUUGCCGCGu -3' miRNA: 3'- -CCU--UGCGGgguaACC-GUAACGGUGCu -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 2035 | 0.68 | 0.954763 |
Target: 5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3' miRNA: 3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5' |
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30196 | 3' | -53.8 | NC_006273.1 | + | 196928 | 0.68 | 0.954763 |
Target: 5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3' miRNA: 3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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