miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 3' -53.8 NC_006273.1 + 196928 0.68 0.954763
Target:  5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3'
miRNA:   3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 185620 0.68 0.956283
Target:  5'- gGGAGCGgCCCGgcGGaagcucgaugagcaGUUGCUGCGAa -3'
miRNA:   3'- -CCUUGCgGGGUaaCCg-------------UAACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 103907 0.68 0.958498
Target:  5'- cGGuuGCGCgCCAc-GGCGUacGCCACGAa -3'
miRNA:   3'- -CCu-UGCGgGGUaaCCGUAa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 130560 0.68 0.962016
Target:  5'- aGGAACGCgCacuugcucUGGCAUUGCCuauagaGCGGc -3'
miRNA:   3'- -CCUUGCGgGgua-----ACCGUAACGG------UGCU- -5'
30196 3' -53.8 NC_006273.1 + 211300 0.68 0.962016
Target:  5'- uGGugGCCCCggUGGCGc-GUgACGAu -3'
miRNA:   3'- cCUugCGGGGuaACCGUaaCGgUGCU- -5'
30196 3' -53.8 NC_006273.1 + 154550 0.68 0.965
Target:  5'- aGGAggcgcuGCGCCCCGc-GGCcgacgucGUUGCCACc- -3'
miRNA:   3'- -CCU------UGCGGGGUaaCCG-------UAACGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 82582 0.68 0.965321
Target:  5'- uGGAGCGCCUCGUUGcGCcagagcgUGCaaACGGg -3'
miRNA:   3'- -CCUUGCGGGGUAAC-CGua-----ACGg-UGCU- -5'
30196 3' -53.8 NC_006273.1 + 156871 0.68 0.965321
Target:  5'- -cGGCGCCCgGUguccgGGCGgcGCCGCa- -3'
miRNA:   3'- ccUUGCGGGgUAa----CCGUaaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 193004 0.67 0.968419
Target:  5'- gGGAugGCCUCGUgcuCAccGCCGCGGa -3'
miRNA:   3'- -CCUugCGGGGUAaccGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 17689 0.67 0.971315
Target:  5'- cGGcGCGUCCCAcccccugGGCcaccaGCCGCGAu -3'
miRNA:   3'- -CCuUGCGGGGUaa-----CCGuaa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 140225 0.67 0.971315
Target:  5'- gGGAccACGCCCag--GGCcagcaaGCCGCGAc -3'
miRNA:   3'- -CCU--UGCGGGguaaCCGuaa---CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 175286 0.67 0.971315
Target:  5'- uGGAAaGuCCCUAUUGGCGUUaCUAUGGg -3'
miRNA:   3'- -CCUUgC-GGGGUAACCGUAAcGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93571 0.67 0.971315
Target:  5'- aGGcGACGCCCCGUaggGGCGgaGCCuaGCu- -3'
miRNA:   3'- -CC-UUGCGGGGUAa--CCGUaaCGG--UGcu -5'
30196 3' -53.8 NC_006273.1 + 114437 0.67 0.974015
Target:  5'- -aGACGCCCCGcgucaccggcGGCGgcGCCAUGGc -3'
miRNA:   3'- ccUUGCGGGGUaa--------CCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 144051 0.67 0.974015
Target:  5'- uGGugauCGCUCCucuGUUGGCGggGCuCACGGu -3'
miRNA:   3'- -CCuu--GCGGGG---UAACCGUaaCG-GUGCU- -5'
30196 3' -53.8 NC_006273.1 + 229540 0.67 0.976526
Target:  5'- aGGAGgGCCgCCaAUUGGCGgcgacagaUGCgGCGGu -3'
miRNA:   3'- -CCUUgCGG-GG-UAACCGUa-------ACGgUGCU- -5'
30196 3' -53.8 NC_006273.1 + 142066 0.67 0.977479
Target:  5'- cGGcAGCGCCgCCAgcGGCgacgGUuaccacggcuugcgcUGCCGCGAa -3'
miRNA:   3'- -CC-UUGCGG-GGUaaCCG----UA---------------ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93301 0.67 0.977479
Target:  5'- cGGcAGCGCaagCCGUgguaaccgucgccgcUGGCGgcgcUGCCGCGAg -3'
miRNA:   3'- -CC-UUGCGg--GGUA---------------ACCGUa---ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 193577 0.67 0.978854
Target:  5'- uGGGAUgugGCUCUGUUGGaagUGCCGCGu -3'
miRNA:   3'- -CCUUG---CGGGGUAACCguaACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 33799 0.67 0.978854
Target:  5'- uGGAG-GCCagguaCA-UGGCGUaGCCGCGAc -3'
miRNA:   3'- -CCUUgCGGg----GUaACCGUAaCGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.