Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30196 | 3' | -53.8 | NC_006273.1 | + | 93021 | 0.71 | 0.871363 |
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Target: 5'- cGGAACGCggCCCg--GGCccgaUGCCACGGc -3' miRNA: 3'- -CCUUGCG--GGGuaaCCGua--ACGGUGCU- -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 103018 | 0.72 | 0.815881 |
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Target: 5'- cGGAcgaaACGCCgCGgcGGCAgcgGCCGCGGc -3' miRNA: 3'- -CCU----UGCGGgGUaaCCGUaa-CGGUGCU- -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 152910 | 0.73 | 0.798458 |
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Target: 5'- cGGugGCCuCCGUggucgaaGGCGUUGCCACc- -3' miRNA: 3'- cCUugCGG-GGUAa------CCGUAACGGUGcu -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 80243 | 0.73 | 0.761922 |
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Target: 5'- gGGcGCGgCCCuc-GGCAUUaGCCACGAa -3' miRNA: 3'- -CCuUGCgGGGuaaCCGUAA-CGGUGCU- -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 43573 | 0.75 | 0.674026 |
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Target: 5'- uGGAGCaGCgCCGUaGGCAagUGCCGCGGc -3' miRNA: 3'- -CCUUG-CGgGGUAaCCGUa-ACGGUGCU- -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 94120 | 0.76 | 0.623617 |
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Target: 5'- gGGAGCgcgaGCCCCGUgccgGGCAUggGUCGCGGc -3' miRNA: 3'- -CCUUG----CGGGGUAa---CCGUAa-CGGUGCU- -5' |
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| 30196 | 3' | -53.8 | NC_006273.1 | + | 190482 | 1.11 | 0.005144 |
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Target: 5'- gGGAACGCCCCAUUGGCAUUGCCACGAa -3' miRNA: 3'- -CCUUGCGGGGUAACCGUAACGGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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