miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 3' -53.8 NC_006273.1 + 2035 0.68 0.954763
Target:  5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3'
miRNA:   3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 17689 0.67 0.971315
Target:  5'- cGGcGCGUCCCAcccccugGGCcaccaGCCGCGAu -3'
miRNA:   3'- -CCuUGCGGGGUaa-----CCGuaa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 33799 0.67 0.978854
Target:  5'- uGGAG-GCCagguaCA-UGGCGUaGCCGCGAc -3'
miRNA:   3'- -CCUUgCGGg----GUaACCGUAaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 43573 0.75 0.674026
Target:  5'- uGGAGCaGCgCCGUaGGCAagUGCCGCGGc -3'
miRNA:   3'- -CCUUG-CGgGGUAaCCGUa-ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 44340 0.69 0.942216
Target:  5'- -cGACGCaCCAUUGGCAcgcUGUCACGc -3'
miRNA:   3'- ccUUGCGgGGUAACCGUa--ACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 46404 0.66 0.982991
Target:  5'- aGGGAUcgcgaGCCCCAUcgGGCcc-GCCACu- -3'
miRNA:   3'- -CCUUG-----CGGGGUAa-CCGuaaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 48578 0.7 0.910902
Target:  5'- aGGGGCGgCaugCCGUUGGCGgcGCCGgGAa -3'
miRNA:   3'- -CCUUGCgG---GGUAACCGUaaCGGUgCU- -5'
30196 3' -53.8 NC_006273.1 + 79050 0.69 0.92227
Target:  5'- uGGGcccacGCGCCaCCAgagccugcGGCGUcagGCCACGAa -3'
miRNA:   3'- -CCU-----UGCGG-GGUaa------CCGUAa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 80243 0.73 0.761922
Target:  5'- gGGcGCGgCCCuc-GGCAUUaGCCACGAa -3'
miRNA:   3'- -CCuUGCgGGGuaaCCGUAA-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 82582 0.68 0.965321
Target:  5'- uGGAGCGCCUCGUUGcGCcagagcgUGCaaACGGg -3'
miRNA:   3'- -CCUUGCGGGGUAAC-CGua-----ACGg-UGCU- -5'
30196 3' -53.8 NC_006273.1 + 89595 0.69 0.92227
Target:  5'- uGGGugGCCUCGcggUGGC--UGCCGCu- -3'
miRNA:   3'- -CCUugCGGGGUa--ACCGuaACGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 93021 0.71 0.871363
Target:  5'- cGGAACGCggCCCg--GGCccgaUGCCACGGc -3'
miRNA:   3'- -CCUUGCG--GGGuaaCCGua--ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93301 0.67 0.977479
Target:  5'- cGGcAGCGCaagCCGUgguaaccgucgccgcUGGCGgcgcUGCCGCGAg -3'
miRNA:   3'- -CC-UUGCGg--GGUA---------------ACCGUa---ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93571 0.67 0.971315
Target:  5'- aGGcGACGCCCCGUaggGGCGgaGCCuaGCu- -3'
miRNA:   3'- -CC-UUGCGGGGUAa--CCGUaaCGG--UGcu -5'
30196 3' -53.8 NC_006273.1 + 93803 0.66 0.988011
Target:  5'- cGGGGCGaauUUCGguuguuagGGCGUUGCCACGc -3'
miRNA:   3'- -CCUUGCg--GGGUaa------CCGUAACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 94120 0.76 0.623617
Target:  5'- gGGAGCgcgaGCCCCGUgccgGGCAUggGUCGCGGc -3'
miRNA:   3'- -CCUUG----CGGGGUAa---CCGUAa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 103018 0.72 0.815881
Target:  5'- cGGAcgaaACGCCgCGgcGGCAgcgGCCGCGGc -3'
miRNA:   3'- -CCU----UGCGGgGUaaCCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 103907 0.68 0.958498
Target:  5'- cGGuuGCGCgCCAc-GGCGUacGCCACGAa -3'
miRNA:   3'- -CCu-UGCGgGGUaaCCGUAa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 114437 0.67 0.974015
Target:  5'- -aGACGCCCCGcgucaccggcGGCGgcGCCAUGGc -3'
miRNA:   3'- ccUUGCGGGGUaa--------CCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 118156 0.69 0.942216
Target:  5'- gGGAacgcGCGCCCCAgccgccGGCGUggcgGCCugacuGCGGc -3'
miRNA:   3'- -CCU----UGCGGGGUaa----CCGUAa---CGG-----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.