Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 124033 | 0.65 | 0.989267 |
Target: 5'- uGGAucACGCcgcugaaCCCAgcGGCGcgGCCGCGc -3' miRNA: 3'- -CCU--UGCG-------GGGUaaCCGUaaCGGUGCu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 130560 | 0.68 | 0.962016 |
Target: 5'- aGGAACGCgCacuugcucUGGCAUUGCCuauagaGCGGc -3' miRNA: 3'- -CCUUGCGgGgua-----ACCGUAACGG------UGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 131977 | 0.66 | 0.984814 |
Target: 5'- uGGAACGCuCCCuguccGGC-UUGUUACGu -3' miRNA: 3'- -CCUUGCG-GGGuaa--CCGuAACGGUGCu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 133000 | 0.7 | 0.916702 |
Target: 5'- aGGAGCGUCuagcgCCGUUGuuGCAgagUGCCACGc -3' miRNA: 3'- -CCUUGCGG-----GGUAAC--CGUa--ACGGUGCu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 134034 | 0.68 | 0.954377 |
Target: 5'- cGGccgcCGCCUgGUUGGUGUUGCCcuccacgGCGAu -3' miRNA: 3'- -CCuu--GCGGGgUAACCGUAACGG-------UGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 135214 | 0.68 | 0.954763 |
Target: 5'- cGGAccugauccuagGCGCCCU----GCAgUGCCACGAg -3' miRNA: 3'- -CCU-----------UGCGGGGuaacCGUaACGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 137975 | 0.66 | 0.986485 |
Target: 5'- cGAGCGCCCCccgauGUAggGCCGCu- -3' miRNA: 3'- cCUUGCGGGGuaac-CGUaaCGGUGcu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 140225 | 0.67 | 0.971315 |
Target: 5'- gGGAccACGCCCag--GGCcagcaaGCCGCGAc -3' miRNA: 3'- -CCU--UGCGGGguaaCCGuaa---CGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 142066 | 0.67 | 0.977479 |
Target: 5'- cGGcAGCGCCgCCAgcGGCgacgGUuaccacggcuugcgcUGCCGCGAa -3' miRNA: 3'- -CC-UUGCGG-GGUaaCCG----UA---------------ACGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 144051 | 0.67 | 0.974015 |
Target: 5'- uGGugauCGCUCCucuGUUGGCGggGCuCACGGu -3' miRNA: 3'- -CCuu--GCGGGG---UAACCGUaaCG-GUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 145870 | 0.66 | 0.981006 |
Target: 5'- cGGAgguGCGCCUCAagaGCA--GCCGCGAc -3' miRNA: 3'- -CCU---UGCGGGGUaacCGUaaCGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 152859 | 0.69 | 0.92227 |
Target: 5'- uGGGCGCCgcgggaaaggCCGUUGGCGUaGCCAUu- -3' miRNA: 3'- cCUUGCGG----------GGUAACCGUAaCGGUGcu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 152910 | 0.73 | 0.798458 |
Target: 5'- cGGugGCCuCCGUggucgaaGGCGUUGCCACc- -3' miRNA: 3'- cCUugCGG-GGUAa------CCGUAACGGUGcu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 154550 | 0.68 | 0.965 |
Target: 5'- aGGAggcgcuGCGCCCCGc-GGCcgacgucGUUGCCACc- -3' miRNA: 3'- -CCU------UGCGGGGUaaCCG-------UAACGGUGcu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 156688 | 0.7 | 0.898614 |
Target: 5'- gGGAaccGCGCCuCCGgcGGCggUGcCCGCGGa -3' miRNA: 3'- -CCU---UGCGG-GGUaaCCGuaAC-GGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 156871 | 0.68 | 0.965321 |
Target: 5'- -cGGCGCCCgGUguccgGGCGgcGCCGCa- -3' miRNA: 3'- ccUUGCGGGgUAa----CCGUaaCGGUGcu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 167159 | 0.69 | 0.942216 |
Target: 5'- uGGcguUGCCgCCGUUGGUg--GCCACGGc -3' miRNA: 3'- -CCuu-GCGG-GGUAACCGuaaCGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 169672 | 0.68 | 0.954763 |
Target: 5'- aGGAcgGCGCCg---UGGcCGUUGCCGCGu -3' miRNA: 3'- -CCU--UGCGGgguaACC-GUAACGGUGCu -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 175286 | 0.67 | 0.971315 |
Target: 5'- uGGAAaGuCCCUAUUGGCGUUaCUAUGGg -3' miRNA: 3'- -CCUUgC-GGGGUAACCGUAAcGGUGCU- -5' |
|||||||
30196 | 3' | -53.8 | NC_006273.1 | + | 185620 | 0.68 | 0.956283 |
Target: 5'- gGGAGCGgCCCGgcGGaagcucgaugagcaGUUGCUGCGAa -3' miRNA: 3'- -CCUUGCgGGGUaaCCg-------------UAACGGUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home