miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 3' -53.8 NC_006273.1 + 33799 0.67 0.978854
Target:  5'- uGGAG-GCCagguaCA-UGGCGUaGCCGCGAc -3'
miRNA:   3'- -CCUUgCGGg----GUaACCGUAaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 103907 0.68 0.958498
Target:  5'- cGGuuGCGCgCCAc-GGCGUacGCCACGAa -3'
miRNA:   3'- -CCu-UGCGgGGUaaCCGUAa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 211300 0.68 0.962016
Target:  5'- uGGugGCCCCggUGGCGc-GUgACGAu -3'
miRNA:   3'- cCUugCGGGGuaACCGUaaCGgUGCU- -5'
30196 3' -53.8 NC_006273.1 + 154550 0.68 0.965
Target:  5'- aGGAggcgcuGCGCCCCGc-GGCcgacgucGUUGCCACc- -3'
miRNA:   3'- -CCU------UGCGGGGUaaCCG-------UAACGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 193004 0.67 0.968419
Target:  5'- gGGAugGCCUCGUgcuCAccGCCGCGGa -3'
miRNA:   3'- -CCUugCGGGGUAaccGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93571 0.67 0.971315
Target:  5'- aGGcGACGCCCCGUaggGGCGgaGCCuaGCu- -3'
miRNA:   3'- -CC-UUGCGGGGUAa--CCGUaaCGG--UGcu -5'
30196 3' -53.8 NC_006273.1 + 175286 0.67 0.971315
Target:  5'- uGGAAaGuCCCUAUUGGCGUUaCUAUGGg -3'
miRNA:   3'- -CCUUgC-GGGGUAACCGUAAcGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 229540 0.67 0.976526
Target:  5'- aGGAGgGCCgCCaAUUGGCGgcgacagaUGCgGCGGu -3'
miRNA:   3'- -CCUUgCGG-GG-UAACCGUa-------ACGgUGCU- -5'
30196 3' -53.8 NC_006273.1 + 142066 0.67 0.977479
Target:  5'- cGGcAGCGCCgCCAgcGGCgacgGUuaccacggcuugcgcUGCCGCGAa -3'
miRNA:   3'- -CC-UUGCGG-GGUaaCCG----UA---------------ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 185620 0.68 0.956283
Target:  5'- gGGAGCGgCCCGgcGGaagcucgaugagcaGUUGCUGCGAa -3'
miRNA:   3'- -CCUUGCgGGGUaaCCg-------------UAACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 196928 0.68 0.954763
Target:  5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3'
miRNA:   3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 134034 0.68 0.954377
Target:  5'- cGGccgcCGCCUgGUUGGUGUUGCCcuccacgGCGAu -3'
miRNA:   3'- -CCuu--GCGGGgUAACCGUAACGG-------UGCU- -5'
30196 3' -53.8 NC_006273.1 + 94120 0.76 0.623617
Target:  5'- gGGAGCgcgaGCCCCGUgccgGGCAUggGUCGCGGc -3'
miRNA:   3'- -CCUUG----CGGGGUAa---CCGUAa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 80243 0.73 0.761922
Target:  5'- gGGcGCGgCCCuc-GGCAUUaGCCACGAa -3'
miRNA:   3'- -CCuUGCgGGGuaaCCGUAA-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 156688 0.7 0.898614
Target:  5'- gGGAaccGCGCCuCCGgcGGCggUGcCCGCGGa -3'
miRNA:   3'- -CCU---UGCGG-GGUaaCCGuaAC-GGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 48578 0.7 0.910902
Target:  5'- aGGGGCGgCaugCCGUUGGCGgcGCCGgGAa -3'
miRNA:   3'- -CCUUGCgG---GGUAACCGUaaCGGUgCU- -5'
30196 3' -53.8 NC_006273.1 + 133000 0.7 0.916702
Target:  5'- aGGAGCGUCuagcgCCGUUGuuGCAgagUGCCACGc -3'
miRNA:   3'- -CCUUGCGG-----GGUAAC--CGUa--ACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 79050 0.69 0.92227
Target:  5'- uGGGcccacGCGCCaCCAgagccugcGGCGUcagGCCACGAa -3'
miRNA:   3'- -CCU-----UGCGG-GGUaa------CCGUAa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 44340 0.69 0.942216
Target:  5'- -cGACGCaCCAUUGGCAcgcUGUCACGc -3'
miRNA:   3'- ccUUGCGgGGUAACCGUa--ACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 167159 0.69 0.942216
Target:  5'- uGGcguUGCCgCCGUUGGUg--GCCACGGc -3'
miRNA:   3'- -CCuu-GCGG-GGUAACCGuaaCGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.