miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 3' -53.8 NC_006273.1 + 43573 0.75 0.674026
Target:  5'- uGGAGCaGCgCCGUaGGCAagUGCCGCGGc -3'
miRNA:   3'- -CCUUG-CGgGGUAaCCGUa-ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93301 0.67 0.977479
Target:  5'- cGGcAGCGCaagCCGUgguaaccgucgccgcUGGCGgcgcUGCCGCGAg -3'
miRNA:   3'- -CC-UUGCGg--GGUA---------------ACCGUa---ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 131977 0.66 0.984814
Target:  5'- uGGAACGCuCCCuguccGGC-UUGUUACGu -3'
miRNA:   3'- -CCUUGCG-GGGuaa--CCGuAACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 124033 0.65 0.989267
Target:  5'- uGGAucACGCcgcugaaCCCAgcGGCGcgGCCGCGc -3'
miRNA:   3'- -CCU--UGCG-------GGGUaaCCGUaaCGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 89595 0.69 0.92227
Target:  5'- uGGGugGCCUCGcggUGGC--UGCCGCu- -3'
miRNA:   3'- -CCUugCGGGGUa--ACCGuaACGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 152859 0.69 0.92227
Target:  5'- uGGGCGCCgcgggaaaggCCGUUGGCGUaGCCAUu- -3'
miRNA:   3'- cCUUGCGG----------GGUAACCGUAaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 169672 0.68 0.954763
Target:  5'- aGGAcgGCGCCg---UGGcCGUUGCCGCGu -3'
miRNA:   3'- -CCU--UGCGGgguaACC-GUAACGGUGCu -5'
30196 3' -53.8 NC_006273.1 + 2035 0.68 0.954763
Target:  5'- gGGGACGCgCCGUgcgcgaUGGCAggaGCCGUGGg -3'
miRNA:   3'- -CCUUGCGgGGUA------ACCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 156871 0.68 0.965321
Target:  5'- -cGGCGCCCgGUguccgGGCGgcGCCGCa- -3'
miRNA:   3'- ccUUGCGGGgUAa----CCGUaaCGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 144051 0.67 0.974015
Target:  5'- uGGugauCGCUCCucuGUUGGCGggGCuCACGGu -3'
miRNA:   3'- -CCuu--GCGGGG---UAACCGUaaCG-GUGCU- -5'
30196 3' -53.8 NC_006273.1 + 17689 0.67 0.971315
Target:  5'- cGGcGCGUCCCAcccccugGGCcaccaGCCGCGAu -3'
miRNA:   3'- -CCuUGCGGGGUaa-----CCGuaa--CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 130560 0.68 0.962016
Target:  5'- aGGAACGCgCacuugcucUGGCAUUGCCuauagaGCGGc -3'
miRNA:   3'- -CCUUGCGgGgua-----ACCGUAACGG------UGCU- -5'
30196 3' -53.8 NC_006273.1 + 152910 0.73 0.798458
Target:  5'- cGGugGCCuCCGUggucgaaGGCGUUGCCACc- -3'
miRNA:   3'- cCUugCGG-GGUAa------CCGUAACGGUGcu -5'
30196 3' -53.8 NC_006273.1 + 140225 0.67 0.971315
Target:  5'- gGGAccACGCCCag--GGCcagcaaGCCGCGAc -3'
miRNA:   3'- -CCU--UGCGGGguaaCCGuaa---CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 103018 0.72 0.815881
Target:  5'- cGGAcgaaACGCCgCGgcGGCAgcgGCCGCGGc -3'
miRNA:   3'- -CCU----UGCGGgGUaaCCGUaa-CGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 135214 0.68 0.954763
Target:  5'- cGGAccugauccuagGCGCCCU----GCAgUGCCACGAg -3'
miRNA:   3'- -CCU-----------UGCGGGGuaacCGUaACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 114437 0.67 0.974015
Target:  5'- -aGACGCCCCGcgucaccggcGGCGgcGCCAUGGc -3'
miRNA:   3'- ccUUGCGGGGUaa--------CCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 145870 0.66 0.981006
Target:  5'- cGGAgguGCGCCUCAagaGCA--GCCGCGAc -3'
miRNA:   3'- -CCU---UGCGGGGUaacCGUaaCGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 93021 0.71 0.871363
Target:  5'- cGGAACGCggCCCg--GGCccgaUGCCACGGc -3'
miRNA:   3'- -CCUUGCG--GGGuaaCCGua--ACGGUGCU- -5'
30196 3' -53.8 NC_006273.1 + 118156 0.69 0.942216
Target:  5'- gGGAacgcGCGCCCCAgccgccGGCGUggcgGCCugacuGCGGc -3'
miRNA:   3'- -CCU----UGCGGGGUaa----CCGUAa---CGG-----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.