miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 5' -51.2 NC_006273.1 + 49486 0.66 0.998315
Target:  5'- -uUCGCugcgcuugGAUCCAgcGCUGCUGCGa-- -3'
miRNA:   3'- gcAGCG--------UUGGGUaaCGAUGACGCaag -5'
30196 5' -51.2 NC_006273.1 + 111772 0.66 0.997953
Target:  5'- --cCGCAGCCCAg-GCUGCcauauccUGCGcUCg -3'
miRNA:   3'- gcaGCGUUGGGUaaCGAUG-------ACGCaAG- -5'
30196 5' -51.2 NC_006273.1 + 621 0.66 0.997611
Target:  5'- aGUcCGCGGCCC--UGUUGCgcGUGUUCc -3'
miRNA:   3'- gCA-GCGUUGGGuaACGAUGa-CGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 133605 0.66 0.997611
Target:  5'- aGUCGCcggcACCUGgugGCUcuGCUGCGUg- -3'
miRNA:   3'- gCAGCGu---UGGGUaa-CGA--UGACGCAag -5'
30196 5' -51.2 NC_006273.1 + 159500 0.66 0.997611
Target:  5'- aCGUgCGCGucuCCCAaugGCUAg-GCGUUCu -3'
miRNA:   3'- -GCA-GCGUu--GGGUaa-CGAUgaCGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 195514 0.66 0.997611
Target:  5'- aGUcCGCGGCCC--UGUUGCgcGUGUUCc -3'
miRNA:   3'- gCA-GCGUUGGGuaACGAUGa-CGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 70942 0.66 0.996108
Target:  5'- uGggCGCGACgCGgcgUGCUGCUGCucaauaccguGUUCa -3'
miRNA:   3'- gCa-GCGUUGgGUa--ACGAUGACG----------CAAG- -5'
30196 5' -51.2 NC_006273.1 + 154453 0.67 0.995461
Target:  5'- uCGcCGCAGCCCGUcgaGCU-CUG-GUUCc -3'
miRNA:   3'- -GCaGCGUUGGGUAa--CGAuGACgCAAG- -5'
30196 5' -51.2 NC_006273.1 + 41827 0.67 0.994728
Target:  5'- cCG-CGUGACgCUGUUGUUGCUGCGg-- -3'
miRNA:   3'- -GCaGCGUUG-GGUAACGAUGACGCaag -5'
30196 5' -51.2 NC_006273.1 + 61385 0.67 0.994728
Target:  5'- aGUCugaGCAguACUCGUUGCUGCcGCGcgCg -3'
miRNA:   3'- gCAG---CGU--UGGGUAACGAUGaCGCaaG- -5'
30196 5' -51.2 NC_006273.1 + 122057 0.67 0.994728
Target:  5'- aCGUCGCGACCCAgcUUGCcgACcaGCa--- -3'
miRNA:   3'- -GCAGCGUUGGGU--AACGa-UGa-CGcaag -5'
30196 5' -51.2 NC_006273.1 + 45942 0.67 0.994728
Target:  5'- uCGUCGCGAggccggcuCCCGggUGCUGCUucugauaaGCGUg- -3'
miRNA:   3'- -GCAGCGUU--------GGGUa-ACGAUGA--------CGCAag -5'
30196 5' -51.2 NC_006273.1 + 61392 0.67 0.994728
Target:  5'- aGUCGCAACCCGUcuccaUGCggaugaGCaGCGcgCc -3'
miRNA:   3'- gCAGCGUUGGGUA-----ACGa-----UGaCGCaaG- -5'
30196 5' -51.2 NC_006273.1 + 130878 0.67 0.993904
Target:  5'- cCG-CGCGACCCGgccGCcgAUcGCGUUCg -3'
miRNA:   3'- -GCaGCGUUGGGUaa-CGa-UGaCGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 222189 0.67 0.993904
Target:  5'- aCGcCGCAcggGCCCGUaGCggGCUGUuuGUUCg -3'
miRNA:   3'- -GCaGCGU---UGGGUAaCGa-UGACG--CAAG- -5'
30196 5' -51.2 NC_006273.1 + 163506 0.67 0.993904
Target:  5'- uGUCGC-GCCCGUUGCcGCcGCagUCg -3'
miRNA:   3'- gCAGCGuUGGGUAACGaUGaCGcaAG- -5'
30196 5' -51.2 NC_006273.1 + 40493 0.67 0.992978
Target:  5'- uCGagGCGGCCCg--GCUGCUGCc--- -3'
miRNA:   3'- -GCagCGUUGGGuaaCGAUGACGcaag -5'
30196 5' -51.2 NC_006273.1 + 155487 0.67 0.992978
Target:  5'- uGUCGCcGCCC-UUGCaauCUGCGccgUCc -3'
miRNA:   3'- gCAGCGuUGGGuAACGau-GACGCa--AG- -5'
30196 5' -51.2 NC_006273.1 + 100496 0.68 0.990792
Target:  5'- gGUCGCAGCCCGguugGCacACgGCGaUCc -3'
miRNA:   3'- gCAGCGUUGGGUaa--CGa-UGaCGCaAG- -5'
30196 5' -51.2 NC_006273.1 + 159341 0.68 0.989515
Target:  5'- gGUCGCGGCUaggUGa-GCUGUGUUCu -3'
miRNA:   3'- gCAGCGUUGGguaACgaUGACGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.