miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 5' -51.2 NC_006273.1 + 190519 1.11 0.009365
Target:  5'- aCGUCGCAACCCAUUGCUACUGCGUUCu -3'
miRNA:   3'- -GCAGCGUUGGGUAACGAUGACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 43294 0.78 0.642171
Target:  5'- cCGUUGCGugCC--UGCUGCUGCGUa- -3'
miRNA:   3'- -GCAGCGUugGGuaACGAUGACGCAag -5'
30196 5' -51.2 NC_006273.1 + 47037 0.71 0.945368
Target:  5'- aCGUCGCAACcgaCCGUUGC-GCUGCc--- -3'
miRNA:   3'- -GCAGCGUUG---GGUAACGaUGACGcaag -5'
30196 5' -51.2 NC_006273.1 + 63787 0.7 0.970963
Target:  5'- aGUCGaGACCCGcggUGCUACcGCGUcuUCc -3'
miRNA:   3'- gCAGCgUUGGGUa--ACGAUGaCGCA--AG- -5'
30196 5' -51.2 NC_006273.1 + 82418 0.69 0.97375
Target:  5'- uG-CGCGACCCGU-GCgUGCUGCGc-- -3'
miRNA:   3'- gCaGCGUUGGGUAaCG-AUGACGCaag -5'
30196 5' -51.2 NC_006273.1 + 104637 0.68 0.984663
Target:  5'- cCGUCGCAaagccgcGCCUGUggccgauuacgUGCUGCUGCa--- -3'
miRNA:   3'- -GCAGCGU-------UGGGUA-----------ACGAUGACGcaag -5'
30196 5' -51.2 NC_006273.1 + 47612 0.68 0.984843
Target:  5'- ---aGCAACCCAgccGCUAcCUGCGUc- -3'
miRNA:   3'- gcagCGUUGGGUaa-CGAU-GACGCAag -5'
30196 5' -51.2 NC_006273.1 + 87763 0.68 0.986053
Target:  5'- uGUCGCGGCgu-UUGCUggcgguuacaaccgGCUGCGUUUg -3'
miRNA:   3'- gCAGCGUUGgguAACGA--------------UGACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 113344 0.68 0.986548
Target:  5'- gGUCGCGacguGCCCGUcuuugUGCacgaacagcaaUAuCUGCGUUCg -3'
miRNA:   3'- gCAGCGU----UGGGUA-----ACG-----------AU-GACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 133914 0.68 0.986548
Target:  5'- uGUCGCGGCCCAUgagGUagaaggGCUGUucgaugugGUUCu -3'
miRNA:   3'- gCAGCGUUGGGUAa--CGa-----UGACG--------CAAG- -5'
30196 5' -51.2 NC_006273.1 + 220443 0.68 0.988103
Target:  5'- aCGUCGCAACCCAgg---AUU-CGUUCg -3'
miRNA:   3'- -GCAGCGUUGGGUaacgaUGAcGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 159341 0.68 0.989515
Target:  5'- gGUCGCGGCUaggUGa-GCUGUGUUCu -3'
miRNA:   3'- gCAGCGUUGGguaACgaUGACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 100496 0.68 0.990792
Target:  5'- gGUCGCAGCCCGguugGCacACgGCGaUCc -3'
miRNA:   3'- gCAGCGUUGGGUaa--CGa-UGaCGCaAG- -5'
30196 5' -51.2 NC_006273.1 + 40493 0.67 0.992978
Target:  5'- uCGagGCGGCCCg--GCUGCUGCc--- -3'
miRNA:   3'- -GCagCGUUGGGuaaCGAUGACGcaag -5'
30196 5' -51.2 NC_006273.1 + 155487 0.67 0.992978
Target:  5'- uGUCGCcGCCC-UUGCaauCUGCGccgUCc -3'
miRNA:   3'- gCAGCGuUGGGuAACGau-GACGCa--AG- -5'
30196 5' -51.2 NC_006273.1 + 222189 0.67 0.993904
Target:  5'- aCGcCGCAcggGCCCGUaGCggGCUGUuuGUUCg -3'
miRNA:   3'- -GCaGCGU---UGGGUAaCGa-UGACG--CAAG- -5'
30196 5' -51.2 NC_006273.1 + 130878 0.67 0.993904
Target:  5'- cCG-CGCGACCCGgccGCcgAUcGCGUUCg -3'
miRNA:   3'- -GCaGCGUUGGGUaa-CGa-UGaCGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 163506 0.67 0.993904
Target:  5'- uGUCGC-GCCCGUUGCcGCcGCagUCg -3'
miRNA:   3'- gCAGCGuUGGGUAACGaUGaCGcaAG- -5'
30196 5' -51.2 NC_006273.1 + 61392 0.67 0.994728
Target:  5'- aGUCGCAACCCGUcuccaUGCggaugaGCaGCGcgCc -3'
miRNA:   3'- gCAGCGUUGGGUA-----ACGa-----UGaCGCaaG- -5'
30196 5' -51.2 NC_006273.1 + 41827 0.67 0.994728
Target:  5'- cCG-CGUGACgCUGUUGUUGCUGCGg-- -3'
miRNA:   3'- -GCaGCGUUG-GGUAACGAUGACGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.