miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30196 5' -51.2 NC_006273.1 + 133605 0.66 0.997611
Target:  5'- aGUCGCcggcACCUGgugGCUcuGCUGCGUg- -3'
miRNA:   3'- gCAGCGu---UGGGUaa-CGA--UGACGCAag -5'
30196 5' -51.2 NC_006273.1 + 133914 0.68 0.986548
Target:  5'- uGUCGCGGCCCAUgagGUagaaggGCUGUucgaugugGUUCu -3'
miRNA:   3'- gCAGCGUUGGGUAa--CGa-----UGACG--------CAAG- -5'
30196 5' -51.2 NC_006273.1 + 154453 0.67 0.995461
Target:  5'- uCGcCGCAGCCCGUcgaGCU-CUG-GUUCc -3'
miRNA:   3'- -GCaGCGUUGGGUAa--CGAuGACgCAAG- -5'
30196 5' -51.2 NC_006273.1 + 155487 0.67 0.992978
Target:  5'- uGUCGCcGCCC-UUGCaauCUGCGccgUCc -3'
miRNA:   3'- gCAGCGuUGGGuAACGau-GACGCa--AG- -5'
30196 5' -51.2 NC_006273.1 + 159341 0.68 0.989515
Target:  5'- gGUCGCGGCUaggUGa-GCUGUGUUCu -3'
miRNA:   3'- gCAGCGUUGGguaACgaUGACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 159500 0.66 0.997611
Target:  5'- aCGUgCGCGucuCCCAaugGCUAg-GCGUUCu -3'
miRNA:   3'- -GCA-GCGUu--GGGUaa-CGAUgaCGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 163506 0.67 0.993904
Target:  5'- uGUCGC-GCCCGUUGCcGCcGCagUCg -3'
miRNA:   3'- gCAGCGuUGGGUAACGaUGaCGcaAG- -5'
30196 5' -51.2 NC_006273.1 + 190519 1.11 0.009365
Target:  5'- aCGUCGCAACCCAUUGCUACUGCGUUCu -3'
miRNA:   3'- -GCAGCGUUGGGUAACGAUGACGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 195514 0.66 0.997611
Target:  5'- aGUcCGCGGCCC--UGUUGCgcGUGUUCc -3'
miRNA:   3'- gCA-GCGUUGGGuaACGAUGa-CGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 220443 0.68 0.988103
Target:  5'- aCGUCGCAACCCAgg---AUU-CGUUCg -3'
miRNA:   3'- -GCAGCGUUGGGUaacgaUGAcGCAAG- -5'
30196 5' -51.2 NC_006273.1 + 222189 0.67 0.993904
Target:  5'- aCGcCGCAcggGCCCGUaGCggGCUGUuuGUUCg -3'
miRNA:   3'- -GCaGCGU---UGGGUAaCGa-UGACG--CAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.