miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 207066 0.65 0.9828
Target:  5'- cGGCGCugACgUUCcagCCAGuacgcguggcaacGCAGAGCa -3'
miRNA:   3'- -CUGCGugUGgAAGa--GGUC-------------CGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 122966 0.66 0.981006
Target:  5'- gGACGCGCACCUccagucccucgUCcgCCGcGcCGGAGCGu -3'
miRNA:   3'- -CUGCGUGUGGA-----------AGa-GGUcC-GUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 105861 0.66 0.981006
Target:  5'- cGGCGCAgCGCCggccaUUCUCCGGGUcGcGCu -3'
miRNA:   3'- -CUGCGU-GUGG-----AAGAGGUCCGuCuUGc -5'
30197 3' -54.4 NC_006273.1 + 105139 0.66 0.981006
Target:  5'- cGACGC-CACCggcggUCgUUCAGGgGGAaaGCGg -3'
miRNA:   3'- -CUGCGuGUGGa----AG-AGGUCCgUCU--UGC- -5'
30197 3' -54.4 NC_006273.1 + 165046 0.66 0.978854
Target:  5'- gGGCGCgGCAgCggugCUCaCGGGCAGAcgcACGg -3'
miRNA:   3'- -CUGCG-UGUgGaa--GAG-GUCCGUCU---UGC- -5'
30197 3' -54.4 NC_006273.1 + 117792 0.66 0.978854
Target:  5'- cGGCGCGa--C-UCUCCGGGCGGuAugGa -3'
miRNA:   3'- -CUGCGUgugGaAGAGGUCCGUC-UugC- -5'
30197 3' -54.4 NC_006273.1 + 211184 0.66 0.978629
Target:  5'- --aGguCACCUUUggcucuuuccccgUCCAGGUAGGugGg -3'
miRNA:   3'- cugCguGUGGAAG-------------AGGUCCGUCUugC- -5'
30197 3' -54.4 NC_006273.1 + 155066 0.66 0.976526
Target:  5'- cGACGCGgAuUCUUCUCaGGGCggccAGAGCGu -3'
miRNA:   3'- -CUGCGUgU-GGAAGAGgUCCG----UCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 191881 0.66 0.976526
Target:  5'- --gGUACugCggUUCUGGGCGGAACa -3'
miRNA:   3'- cugCGUGugGaaGAGGUCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 170987 0.66 0.976526
Target:  5'- aGCGCGCACCcaggacCUCC-GGUAcGGACGu -3'
miRNA:   3'- cUGCGUGUGGaa----GAGGuCCGU-CUUGC- -5'
30197 3' -54.4 NC_006273.1 + 170555 0.66 0.976526
Target:  5'- -gUGCACgguccggccgaACCgcgaCUCCAGGCGGcGCGg -3'
miRNA:   3'- cuGCGUG-----------UGGaa--GAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 56413 0.66 0.971315
Target:  5'- -gUGCGCACgUUC-CCAGGCAc-GCGg -3'
miRNA:   3'- cuGCGUGUGgAAGaGGUCCGUcuUGC- -5'
30197 3' -54.4 NC_006273.1 + 57187 0.66 0.970467
Target:  5'- cGGCGUGCACCagaaUCUgcacggugcccguaGGGCAGGGCGc -3'
miRNA:   3'- -CUGCGUGUGGaag-AGG--------------UCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 18468 0.67 0.968419
Target:  5'- -cCGCACGCCgggUCgcaCCgAGGUGGAGCc -3'
miRNA:   3'- cuGCGUGUGGa--AGa--GG-UCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 118234 0.67 0.968419
Target:  5'- aACGCACGCCgcCUC-AGGCGaAACGc -3'
miRNA:   3'- cUGCGUGUGGaaGAGgUCCGUcUUGC- -5'
30197 3' -54.4 NC_006273.1 + 135768 0.67 0.968419
Target:  5'- uGACGCcguCGCCUUCUCaCGgcGGCAGucCa -3'
miRNA:   3'- -CUGCGu--GUGGAAGAG-GU--CCGUCuuGc -5'
30197 3' -54.4 NC_006273.1 + 197032 0.67 0.968419
Target:  5'- gGACGCGCACgCgguggUCgGGGCGGAcGCGa -3'
miRNA:   3'- -CUGCGUGUG-Gaag--AGgUCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 2139 0.67 0.968419
Target:  5'- gGACGCGCACgCgguggUCgGGGCGGAcGCGa -3'
miRNA:   3'- -CUGCGUGUG-Gaag--AGgUCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 64717 0.67 0.968119
Target:  5'- -gUGCGCAUCUUCUCCaccaaccAGGguGggUu -3'
miRNA:   3'- cuGCGUGUGGAAGAGG-------UCCguCuuGc -5'
30197 3' -54.4 NC_006273.1 + 143489 0.67 0.965321
Target:  5'- cGGCGCaaaugagcuacgGCGCCUgUCUCCuGGGC-GAGCa -3'
miRNA:   3'- -CUGCG------------UGUGGA-AGAGG-UCCGuCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.