miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 190722 1.08 0.007343
Target:  5'- gGACGCACACCUUCUCCAGGCAGAACGc -3'
miRNA:   3'- -CUGCGUGUGGAAGAGGUCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 148023 0.8 0.38032
Target:  5'- uGGCGCGCACCUUCacgCCGGuGCAGAuucagACGg -3'
miRNA:   3'- -CUGCGUGUGGAAGa--GGUC-CGUCU-----UGC- -5'
30197 3' -54.4 NC_006273.1 + 35679 0.74 0.694013
Target:  5'- cACGUACACCUUgUCCucgccGGGCAGGuACGc -3'
miRNA:   3'- cUGCGUGUGGAAgAGG-----UCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 218543 0.73 0.713798
Target:  5'- cACGUACACCUUCaUgAGGCGGcGCGa -3'
miRNA:   3'- cUGCGUGUGGAAGaGgUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 182686 0.71 0.815881
Target:  5'- cGACGCugAaagUUUUUCCAGGaCAGAACa -3'
miRNA:   3'- -CUGCGugUg--GAAGAGGUCC-GUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 170675 0.71 0.823513
Target:  5'- aGACGCGCGCCcUCuuccaugauggcgUCCAGcgccucggucuGCAGGACGg -3'
miRNA:   3'- -CUGCGUGUGGaAG-------------AGGUC-----------CGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 164632 0.71 0.824353
Target:  5'- cACGCGCACCUgCU-CGGGCGGAcACa -3'
miRNA:   3'- cUGCGUGUGGAaGAgGUCCGUCU-UGc -5'
30197 3' -54.4 NC_006273.1 + 122798 0.71 0.840778
Target:  5'- cGGCGCACugCgccagCCAGGUAGAAg- -3'
miRNA:   3'- -CUGCGUGugGaaga-GGUCCGUCUUgc -5'
30197 3' -54.4 NC_006273.1 + 104934 0.7 0.8785
Target:  5'- gGugGCACACCgUCUgcUCGGGCA-AGCGa -3'
miRNA:   3'- -CugCGUGUGGaAGA--GGUCCGUcUUGC- -5'
30197 3' -54.4 NC_006273.1 + 39908 0.7 0.8785
Target:  5'- aGCGCGCACC--CUCUAGGUGG-ACGc -3'
miRNA:   3'- cUGCGUGUGGaaGAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 151740 0.7 0.885424
Target:  5'- -uCGCGCGCCUUgcgcacggcCUCCaacacGGGCAGGugGu -3'
miRNA:   3'- cuGCGUGUGGAA---------GAGG-----UCCGUCUugC- -5'
30197 3' -54.4 NC_006273.1 + 214082 0.69 0.904872
Target:  5'- -uCGCGCACCggCUgCAGaCAGGGCGa -3'
miRNA:   3'- cuGCGUGUGGaaGAgGUCcGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 38154 0.69 0.916702
Target:  5'- cGACGCgguuuauauACACCgUCUCgGacGGCGGGACGc -3'
miRNA:   3'- -CUGCG---------UGUGGaAGAGgU--CCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 210614 0.69 0.916702
Target:  5'- cGACGUcaACACCUcgcggggCUCCuGGCAGGcacACGu -3'
miRNA:   3'- -CUGCG--UGUGGAa------GAGGuCCGUCU---UGC- -5'
30197 3' -54.4 NC_006273.1 + 31661 0.69 0.92227
Target:  5'- -cUGCGCugCUaUCUCCAGcaccagcuGCAGAGCa -3'
miRNA:   3'- cuGCGUGugGA-AGAGGUC--------CGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 199648 0.68 0.927082
Target:  5'- gGACGCaaacacgGCGCCcgagaucugggUCUCCGGGCAcGGGCa -3'
miRNA:   3'- -CUGCG-------UGUGGa----------AGAGGUCCGU-CUUGc -5'
30197 3' -54.4 NC_006273.1 + 80910 0.68 0.927605
Target:  5'- uGAUGCGCGCCaagUUCU-GGCGGAACc -3'
miRNA:   3'- -CUGCGUGUGGaa-GAGGuCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 87033 0.68 0.927605
Target:  5'- uGCGC-CACCacCUCCGGGUAGAu-- -3'
miRNA:   3'- cUGCGuGUGGaaGAGGUCCGUCUugc -5'
30197 3' -54.4 NC_006273.1 + 20634 0.68 0.927605
Target:  5'- -cCGCcgGCACCcacggugCUCC-GGCAGAACGa -3'
miRNA:   3'- cuGCG--UGUGGaa-----GAGGuCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 42776 0.68 0.931706
Target:  5'- cGGCGCACACC--CUCCAGGUuuucuucaauGCGc -3'
miRNA:   3'- -CUGCGUGUGGaaGAGGUCCGucu-------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.