miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 103713 0.67 0.965321
Target:  5'- cGCGUACACUgcgCUUCGGGCGccGCGu -3'
miRNA:   3'- cUGCGUGUGGaa-GAGGUCCGUcuUGC- -5'
30197 3' -54.4 NC_006273.1 + 104234 0.67 0.962016
Target:  5'- -uCGCGCACCUcgccgccgUgUUCGGGCgAGAGCa -3'
miRNA:   3'- cuGCGUGUGGA--------AgAGGUCCG-UCUUGc -5'
30197 3' -54.4 NC_006273.1 + 190134 0.67 0.962016
Target:  5'- cGGCGCGagcaGCCg---CCGGGCGGcACGg -3'
miRNA:   3'- -CUGCGUg---UGGaagaGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 213977 0.67 0.958134
Target:  5'- aGGCGCGCagccauaccgccaGCC-UCUCUAGGUAGGGg- -3'
miRNA:   3'- -CUGCGUG-------------UGGaAGAGGUCCGUCUUgc -5'
30197 3' -54.4 NC_006273.1 + 100527 0.67 0.954763
Target:  5'- uGACGCAUGCCgcccaccgUCUCCAGauagggaucguGCGGGuugACGg -3'
miRNA:   3'- -CUGCGUGUGGa-------AGAGGUC-----------CGUCU---UGC- -5'
30197 3' -54.4 NC_006273.1 + 29198 0.68 0.950806
Target:  5'- aGGCGCGCugCgugCUCCgaucGGGCGGu-CGa -3'
miRNA:   3'- -CUGCGUGugGaa-GAGG----UCCGUCuuGC- -5'
30197 3' -54.4 NC_006273.1 + 215549 0.68 0.949988
Target:  5'- aGACGCACGCUggaaaagagugCUCCAGcCGGuGCGg -3'
miRNA:   3'- -CUGCGUGUGGaa---------GAGGUCcGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 142163 0.68 0.946625
Target:  5'- aGCGUACGCCgcgcUCUCUucaccGGCGGcAGCGa -3'
miRNA:   3'- cUGCGUGUGGa---AGAGGu----CCGUC-UUGC- -5'
30197 3' -54.4 NC_006273.1 + 167380 0.68 0.946625
Target:  5'- -cCGCcacccaugACGCCg---CCGGGCAGAGCGu -3'
miRNA:   3'- cuGCG--------UGUGGaagaGGUCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 33409 0.68 0.942216
Target:  5'- gGACGCGCACCgcCUCgGgcgucGGCGGcGCGc -3'
miRNA:   3'- -CUGCGUGUGGaaGAGgU-----CCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 20571 0.68 0.942216
Target:  5'- uGGCGuCGCACgUgggUUCCGGGaCAGAACc -3'
miRNA:   3'- -CUGC-GUGUGgAa--GAGGUCC-GUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 234800 0.68 0.932708
Target:  5'- aGCGCGCACCcUC-CUAGGUGG-ACGc -3'
miRNA:   3'- cUGCGUGUGGaAGaGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 222136 0.68 0.932708
Target:  5'- aGACGUuuaacCGCCcgUUCCAGGCgAGAGCu -3'
miRNA:   3'- -CUGCGu----GUGGaaGAGGUCCG-UCUUGc -5'
30197 3' -54.4 NC_006273.1 + 231091 0.68 0.932708
Target:  5'- uGAUGCGCACCUUCggC-GGUaugaAGAACGa -3'
miRNA:   3'- -CUGCGUGUGGAAGagGuCCG----UCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 151858 0.68 0.932708
Target:  5'- cGCGCACGCgaUUCUcCCAGGUcugguuGAGCGu -3'
miRNA:   3'- cUGCGUGUGg-AAGA-GGUCCGu-----CUUGC- -5'
30197 3' -54.4 NC_006273.1 + 42776 0.68 0.931706
Target:  5'- cGGCGCACACC--CUCCAGGUuuucuucaauGCGc -3'
miRNA:   3'- -CUGCGUGUGGaaGAGGUCCGucu-------UGC- -5'
30197 3' -54.4 NC_006273.1 + 87033 0.68 0.927605
Target:  5'- uGCGC-CACCacCUCCGGGUAGAu-- -3'
miRNA:   3'- cUGCGuGUGGaaGAGGUCCGUCUugc -5'
30197 3' -54.4 NC_006273.1 + 20634 0.68 0.927605
Target:  5'- -cCGCcgGCACCcacggugCUCC-GGCAGAACGa -3'
miRNA:   3'- cuGCG--UGUGGaa-----GAGGuCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 80910 0.68 0.927605
Target:  5'- uGAUGCGCGCCaagUUCU-GGCGGAACc -3'
miRNA:   3'- -CUGCGUGUGGaa-GAGGuCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 199648 0.68 0.927082
Target:  5'- gGACGCaaacacgGCGCCcgagaucugggUCUCCGGGCAcGGGCa -3'
miRNA:   3'- -CUGCG-------UGUGGa----------AGAGGUCCGU-CUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.