miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 2139 0.67 0.968419
Target:  5'- gGACGCGCACgCgguggUCgGGGCGGAcGCGa -3'
miRNA:   3'- -CUGCGUGUG-Gaag--AGgUCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 18468 0.67 0.968419
Target:  5'- -cCGCACGCCgggUCgcaCCgAGGUGGAGCc -3'
miRNA:   3'- cuGCGUGUGGa--AGa--GG-UCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 20571 0.68 0.942216
Target:  5'- uGGCGuCGCACgUgggUUCCGGGaCAGAACc -3'
miRNA:   3'- -CUGC-GUGUGgAa--GAGGUCC-GUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 20634 0.68 0.927605
Target:  5'- -cCGCcgGCACCcacggugCUCC-GGCAGAACGa -3'
miRNA:   3'- cuGCG--UGUGGaa-----GAGGuCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 29198 0.68 0.950806
Target:  5'- aGGCGCGCugCgugCUCCgaucGGGCGGu-CGa -3'
miRNA:   3'- -CUGCGUGugGaa-GAGG----UCCGUCuuGC- -5'
30197 3' -54.4 NC_006273.1 + 31661 0.69 0.92227
Target:  5'- -cUGCGCugCUaUCUCCAGcaccagcuGCAGAGCa -3'
miRNA:   3'- cuGCGUGugGA-AGAGGUC--------CGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 33409 0.68 0.942216
Target:  5'- gGACGCGCACCgcCUCgGgcgucGGCGGcGCGc -3'
miRNA:   3'- -CUGCGUGUGGaaGAGgU-----CCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 35679 0.74 0.694013
Target:  5'- cACGUACACCUUgUCCucgccGGGCAGGuACGc -3'
miRNA:   3'- cUGCGUGUGGAAgAGG-----UCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 38154 0.69 0.916702
Target:  5'- cGACGCgguuuauauACACCgUCUCgGacGGCGGGACGc -3'
miRNA:   3'- -CUGCG---------UGUGGaAGAGgU--CCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 39908 0.7 0.8785
Target:  5'- aGCGCGCACC--CUCUAGGUGG-ACGc -3'
miRNA:   3'- cUGCGUGUGGaaGAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 42776 0.68 0.931706
Target:  5'- cGGCGCACACC--CUCCAGGUuuucuucaauGCGc -3'
miRNA:   3'- -CUGCGUGUGGaaGAGGUCCGucu-------UGC- -5'
30197 3' -54.4 NC_006273.1 + 56413 0.66 0.971315
Target:  5'- -gUGCGCACgUUC-CCAGGCAc-GCGg -3'
miRNA:   3'- cuGCGUGUGgAAGaGGUCCGUcuUGC- -5'
30197 3' -54.4 NC_006273.1 + 57187 0.66 0.970467
Target:  5'- cGGCGUGCACCagaaUCUgcacggugcccguaGGGCAGGGCGc -3'
miRNA:   3'- -CUGCGUGUGGaag-AGG--------------UCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 64717 0.67 0.968119
Target:  5'- -gUGCGCAUCUUCUCCaccaaccAGGguGggUu -3'
miRNA:   3'- cuGCGUGUGGAAGAGG-------UCCguCuuGc -5'
30197 3' -54.4 NC_006273.1 + 80910 0.68 0.927605
Target:  5'- uGAUGCGCGCCaagUUCU-GGCGGAACc -3'
miRNA:   3'- -CUGCGUGUGGaa-GAGGuCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 87033 0.68 0.927605
Target:  5'- uGCGC-CACCacCUCCGGGUAGAu-- -3'
miRNA:   3'- cUGCGuGUGGaaGAGGUCCGUCUugc -5'
30197 3' -54.4 NC_006273.1 + 100527 0.67 0.954763
Target:  5'- uGACGCAUGCCgcccaccgUCUCCAGauagggaucguGCGGGuugACGg -3'
miRNA:   3'- -CUGCGUGUGGa-------AGAGGUC-----------CGUCU---UGC- -5'
30197 3' -54.4 NC_006273.1 + 103713 0.67 0.965321
Target:  5'- cGCGUACACUgcgCUUCGGGCGccGCGu -3'
miRNA:   3'- cUGCGUGUGGaa-GAGGUCCGUcuUGC- -5'
30197 3' -54.4 NC_006273.1 + 104234 0.67 0.962016
Target:  5'- -uCGCGCACCUcgccgccgUgUUCGGGCgAGAGCa -3'
miRNA:   3'- cuGCGUGUGGA--------AgAGGUCCG-UCUUGc -5'
30197 3' -54.4 NC_006273.1 + 104934 0.7 0.8785
Target:  5'- gGugGCACACCgUCUgcUCGGGCA-AGCGa -3'
miRNA:   3'- -CugCGUGUGGaAGA--GGUCCGUcUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.