Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30197 | 3' | -54.4 | NC_006273.1 | + | 105139 | 0.66 | 0.981006 |
Target: 5'- cGACGC-CACCggcggUCgUUCAGGgGGAaaGCGg -3' miRNA: 3'- -CUGCGuGUGGa----AG-AGGUCCgUCU--UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 105861 | 0.66 | 0.981006 |
Target: 5'- cGGCGCAgCGCCggccaUUCUCCGGGUcGcGCu -3' miRNA: 3'- -CUGCGU-GUGG-----AAGAGGUCCGuCuUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 117792 | 0.66 | 0.978854 |
Target: 5'- cGGCGCGa--C-UCUCCGGGCGGuAugGa -3' miRNA: 3'- -CUGCGUgugGaAGAGGUCCGUC-UugC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 118234 | 0.67 | 0.968419 |
Target: 5'- aACGCACGCCgcCUC-AGGCGaAACGc -3' miRNA: 3'- cUGCGUGUGGaaGAGgUCCGUcUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 122798 | 0.71 | 0.840778 |
Target: 5'- cGGCGCACugCgccagCCAGGUAGAAg- -3' miRNA: 3'- -CUGCGUGugGaaga-GGUCCGUCUUgc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 122966 | 0.66 | 0.981006 |
Target: 5'- gGACGCGCACCUccagucccucgUCcgCCGcGcCGGAGCGu -3' miRNA: 3'- -CUGCGUGUGGA-----------AGa-GGUcC-GUCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 135768 | 0.67 | 0.968419 |
Target: 5'- uGACGCcguCGCCUUCUCaCGgcGGCAGucCa -3' miRNA: 3'- -CUGCGu--GUGGAAGAG-GU--CCGUCuuGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 142163 | 0.68 | 0.946625 |
Target: 5'- aGCGUACGCCgcgcUCUCUucaccGGCGGcAGCGa -3' miRNA: 3'- cUGCGUGUGGa---AGAGGu----CCGUC-UUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 143489 | 0.67 | 0.965321 |
Target: 5'- cGGCGCaaaugagcuacgGCGCCUgUCUCCuGGGC-GAGCa -3' miRNA: 3'- -CUGCG------------UGUGGA-AGAGG-UCCGuCUUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 148023 | 0.8 | 0.38032 |
Target: 5'- uGGCGCGCACCUUCacgCCGGuGCAGAuucagACGg -3' miRNA: 3'- -CUGCGUGUGGAAGa--GGUC-CGUCU-----UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 151740 | 0.7 | 0.885424 |
Target: 5'- -uCGCGCGCCUUgcgcacggcCUCCaacacGGGCAGGugGu -3' miRNA: 3'- cuGCGUGUGGAA---------GAGG-----UCCGUCUugC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 151858 | 0.68 | 0.932708 |
Target: 5'- cGCGCACGCgaUUCUcCCAGGUcugguuGAGCGu -3' miRNA: 3'- cUGCGUGUGg-AAGA-GGUCCGu-----CUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 155066 | 0.66 | 0.976526 |
Target: 5'- cGACGCGgAuUCUUCUCaGGGCggccAGAGCGu -3' miRNA: 3'- -CUGCGUgU-GGAAGAGgUCCG----UCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 164632 | 0.71 | 0.824353 |
Target: 5'- cACGCGCACCUgCU-CGGGCGGAcACa -3' miRNA: 3'- cUGCGUGUGGAaGAgGUCCGUCU-UGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 165046 | 0.66 | 0.978854 |
Target: 5'- gGGCGCgGCAgCggugCUCaCGGGCAGAcgcACGg -3' miRNA: 3'- -CUGCG-UGUgGaa--GAG-GUCCGUCU---UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 167380 | 0.68 | 0.946625 |
Target: 5'- -cCGCcacccaugACGCCg---CCGGGCAGAGCGu -3' miRNA: 3'- cuGCG--------UGUGGaagaGGUCCGUCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 170555 | 0.66 | 0.976526 |
Target: 5'- -gUGCACgguccggccgaACCgcgaCUCCAGGCGGcGCGg -3' miRNA: 3'- cuGCGUG-----------UGGaa--GAGGUCCGUCuUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 170675 | 0.71 | 0.823513 |
Target: 5'- aGACGCGCGCCcUCuuccaugauggcgUCCAGcgccucggucuGCAGGACGg -3' miRNA: 3'- -CUGCGUGUGGaAG-------------AGGUC-----------CGUCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 170987 | 0.66 | 0.976526 |
Target: 5'- aGCGCGCACCcaggacCUCC-GGUAcGGACGu -3' miRNA: 3'- cUGCGUGUGGaa----GAGGuCCGU-CUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 182686 | 0.71 | 0.815881 |
Target: 5'- cGACGCugAaagUUUUUCCAGGaCAGAACa -3' miRNA: 3'- -CUGCGugUg--GAAGAGGUCC-GUCUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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