miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 234800 0.68 0.932708
Target:  5'- aGCGCGCACCcUC-CUAGGUGG-ACGc -3'
miRNA:   3'- cUGCGUGUGGaAGaGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 231091 0.68 0.932708
Target:  5'- uGAUGCGCACCUUCggC-GGUaugaAGAACGa -3'
miRNA:   3'- -CUGCGUGUGGAAGagGuCCG----UCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 222136 0.68 0.932708
Target:  5'- aGACGUuuaacCGCCcgUUCCAGGCgAGAGCu -3'
miRNA:   3'- -CUGCGu----GUGGaaGAGGUCCG-UCUUGc -5'
30197 3' -54.4 NC_006273.1 + 218543 0.73 0.713798
Target:  5'- cACGUACACCUUCaUgAGGCGGcGCGa -3'
miRNA:   3'- cUGCGUGUGGAAGaGgUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 215549 0.68 0.949988
Target:  5'- aGACGCACGCUggaaaagagugCUCCAGcCGGuGCGg -3'
miRNA:   3'- -CUGCGUGUGGaa---------GAGGUCcGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 214082 0.69 0.904872
Target:  5'- -uCGCGCACCggCUgCAGaCAGGGCGa -3'
miRNA:   3'- cuGCGUGUGGaaGAgGUCcGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 213977 0.67 0.958134
Target:  5'- aGGCGCGCagccauaccgccaGCC-UCUCUAGGUAGGGg- -3'
miRNA:   3'- -CUGCGUG-------------UGGaAGAGGUCCGUCUUgc -5'
30197 3' -54.4 NC_006273.1 + 211184 0.66 0.978629
Target:  5'- --aGguCACCUUUggcucuuuccccgUCCAGGUAGGugGg -3'
miRNA:   3'- cugCguGUGGAAG-------------AGGUCCGUCUugC- -5'
30197 3' -54.4 NC_006273.1 + 210614 0.69 0.916702
Target:  5'- cGACGUcaACACCUcgcggggCUCCuGGCAGGcacACGu -3'
miRNA:   3'- -CUGCG--UGUGGAa------GAGGuCCGUCU---UGC- -5'
30197 3' -54.4 NC_006273.1 + 207066 0.65 0.9828
Target:  5'- cGGCGCugACgUUCcagCCAGuacgcguggcaacGCAGAGCa -3'
miRNA:   3'- -CUGCGugUGgAAGa--GGUC-------------CGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 199648 0.68 0.927082
Target:  5'- gGACGCaaacacgGCGCCcgagaucugggUCUCCGGGCAcGGGCa -3'
miRNA:   3'- -CUGCG-------UGUGGa----------AGAGGUCCGU-CUUGc -5'
30197 3' -54.4 NC_006273.1 + 197032 0.67 0.968419
Target:  5'- gGACGCGCACgCgguggUCgGGGCGGAcGCGa -3'
miRNA:   3'- -CUGCGUGUG-Gaag--AGgUCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 191881 0.66 0.976526
Target:  5'- --gGUACugCggUUCUGGGCGGAACa -3'
miRNA:   3'- cugCGUGugGaaGAGGUCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 190722 1.08 0.007343
Target:  5'- gGACGCACACCUUCUCCAGGCAGAACGc -3'
miRNA:   3'- -CUGCGUGUGGAAGAGGUCCGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 190134 0.67 0.962016
Target:  5'- cGGCGCGagcaGCCg---CCGGGCGGcACGg -3'
miRNA:   3'- -CUGCGUg---UGGaagaGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 182686 0.71 0.815881
Target:  5'- cGACGCugAaagUUUUUCCAGGaCAGAACa -3'
miRNA:   3'- -CUGCGugUg--GAAGAGGUCC-GUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 170987 0.66 0.976526
Target:  5'- aGCGCGCACCcaggacCUCC-GGUAcGGACGu -3'
miRNA:   3'- cUGCGUGUGGaa----GAGGuCCGU-CUUGC- -5'
30197 3' -54.4 NC_006273.1 + 170675 0.71 0.823513
Target:  5'- aGACGCGCGCCcUCuuccaugauggcgUCCAGcgccucggucuGCAGGACGg -3'
miRNA:   3'- -CUGCGUGUGGaAG-------------AGGUC-----------CGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 170555 0.66 0.976526
Target:  5'- -gUGCACgguccggccgaACCgcgaCUCCAGGCGGcGCGg -3'
miRNA:   3'- cuGCGUG-----------UGGaa--GAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 167380 0.68 0.946625
Target:  5'- -cCGCcacccaugACGCCg---CCGGGCAGAGCGu -3'
miRNA:   3'- cuGCG--------UGUGGaagaGGUCCGUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.