Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30197 | 3' | -54.4 | NC_006273.1 | + | 142163 | 0.68 | 0.946625 |
Target: 5'- aGCGUACGCCgcgcUCUCUucaccGGCGGcAGCGa -3' miRNA: 3'- cUGCGUGUGGa---AGAGGu----CCGUC-UUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 42776 | 0.68 | 0.931706 |
Target: 5'- cGGCGCACACC--CUCCAGGUuuucuucaauGCGc -3' miRNA: 3'- -CUGCGUGUGGaaGAGGUCCGucu-------UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 222136 | 0.68 | 0.932708 |
Target: 5'- aGACGUuuaacCGCCcgUUCCAGGCgAGAGCu -3' miRNA: 3'- -CUGCGu----GUGGaaGAGGUCCG-UCUUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 231091 | 0.68 | 0.932708 |
Target: 5'- uGAUGCGCACCUUCggC-GGUaugaAGAACGa -3' miRNA: 3'- -CUGCGUGUGGAAGagGuCCG----UCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 234800 | 0.68 | 0.932708 |
Target: 5'- aGCGCGCACCcUC-CUAGGUGG-ACGc -3' miRNA: 3'- cUGCGUGUGGaAGaGGUCCGUCuUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 151858 | 0.68 | 0.932708 |
Target: 5'- cGCGCACGCgaUUCUcCCAGGUcugguuGAGCGu -3' miRNA: 3'- cUGCGUGUGg-AAGA-GGUCCGu-----CUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 20571 | 0.68 | 0.942216 |
Target: 5'- uGGCGuCGCACgUgggUUCCGGGaCAGAACc -3' miRNA: 3'- -CUGC-GUGUGgAa--GAGGUCC-GUCUUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 33409 | 0.68 | 0.942216 |
Target: 5'- gGACGCGCACCgcCUCgGgcgucGGCGGcGCGc -3' miRNA: 3'- -CUGCGUGUGGaaGAGgU-----CCGUCuUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 167380 | 0.68 | 0.946625 |
Target: 5'- -cCGCcacccaugACGCCg---CCGGGCAGAGCGu -3' miRNA: 3'- cuGCG--------UGUGGaagaGGUCCGUCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 20634 | 0.68 | 0.927605 |
Target: 5'- -cCGCcgGCACCcacggugCUCC-GGCAGAACGa -3' miRNA: 3'- cuGCG--UGUGGaa-----GAGGuCCGUCUUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 87033 | 0.68 | 0.927605 |
Target: 5'- uGCGC-CACCacCUCCGGGUAGAu-- -3' miRNA: 3'- cUGCGuGUGGaaGAGGUCCGUCUugc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 31661 | 0.69 | 0.92227 |
Target: 5'- -cUGCGCugCUaUCUCCAGcaccagcuGCAGAGCa -3' miRNA: 3'- cuGCGUGugGA-AGAGGUC--------CGUCUUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 148023 | 0.8 | 0.38032 |
Target: 5'- uGGCGCGCACCUUCacgCCGGuGCAGAuucagACGg -3' miRNA: 3'- -CUGCGUGUGGAAGa--GGUC-CGUCU-----UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 35679 | 0.74 | 0.694013 |
Target: 5'- cACGUACACCUUgUCCucgccGGGCAGGuACGc -3' miRNA: 3'- cUGCGUGUGGAAgAGG-----UCCGUCU-UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 218543 | 0.73 | 0.713798 |
Target: 5'- cACGUACACCUUCaUgAGGCGGcGCGa -3' miRNA: 3'- cUGCGUGUGGAAGaGgUCCGUCuUGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 182686 | 0.71 | 0.815881 |
Target: 5'- cGACGCugAaagUUUUUCCAGGaCAGAACa -3' miRNA: 3'- -CUGCGugUg--GAAGAGGUCC-GUCUUGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 164632 | 0.71 | 0.824353 |
Target: 5'- cACGCGCACCUgCU-CGGGCGGAcACa -3' miRNA: 3'- cUGCGUGUGGAaGAgGUCCGUCU-UGc -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 151740 | 0.7 | 0.885424 |
Target: 5'- -uCGCGCGCCUUgcgcacggcCUCCaacacGGGCAGGugGu -3' miRNA: 3'- cuGCGUGUGGAA---------GAGG-----UCCGUCUugC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 210614 | 0.69 | 0.916702 |
Target: 5'- cGACGUcaACACCUcgcggggCUCCuGGCAGGcacACGu -3' miRNA: 3'- -CUGCG--UGUGGAa------GAGGuCCGUCU---UGC- -5' |
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30197 | 3' | -54.4 | NC_006273.1 | + | 38154 | 0.69 | 0.916702 |
Target: 5'- cGACGCgguuuauauACACCgUCUCgGacGGCGGGACGc -3' miRNA: 3'- -CUGCG---------UGUGGaAGAGgU--CCGUCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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