miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 3' -54.4 NC_006273.1 + 170675 0.71 0.823513
Target:  5'- aGACGCGCGCCcUCuuccaugauggcgUCCAGcgccucggucuGCAGGACGg -3'
miRNA:   3'- -CUGCGUGUGGaAG-------------AGGUC-----------CGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 118234 0.67 0.968419
Target:  5'- aACGCACGCCgcCUC-AGGCGaAACGc -3'
miRNA:   3'- cUGCGUGUGGaaGAGgUCCGUcUUGC- -5'
30197 3' -54.4 NC_006273.1 + 190134 0.67 0.962016
Target:  5'- cGGCGCGagcaGCCg---CCGGGCGGcACGg -3'
miRNA:   3'- -CUGCGUg---UGGaagaGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 29198 0.68 0.950806
Target:  5'- aGGCGCGCugCgugCUCCgaucGGGCGGu-CGa -3'
miRNA:   3'- -CUGCGUGugGaa-GAGG----UCCGUCuuGC- -5'
30197 3' -54.4 NC_006273.1 + 199648 0.68 0.927082
Target:  5'- gGACGCaaacacgGCGCCcgagaucugggUCUCCGGGCAcGGGCa -3'
miRNA:   3'- -CUGCG-------UGUGGa----------AGAGGUCCGU-CUUGc -5'
30197 3' -54.4 NC_006273.1 + 214082 0.69 0.904872
Target:  5'- -uCGCGCACCggCUgCAGaCAGGGCGa -3'
miRNA:   3'- cuGCGUGUGGaaGAgGUCcGUCUUGC- -5'
30197 3' -54.4 NC_006273.1 + 211184 0.66 0.978629
Target:  5'- --aGguCACCUUUggcucuuuccccgUCCAGGUAGGugGg -3'
miRNA:   3'- cugCguGUGGAAG-------------AGGUCCGUCUugC- -5'
30197 3' -54.4 NC_006273.1 + 191881 0.66 0.976526
Target:  5'- --gGUACugCggUUCUGGGCGGAACa -3'
miRNA:   3'- cugCGUGugGaaGAGGUCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 135768 0.67 0.968419
Target:  5'- uGACGCcguCGCCUUCUCaCGgcGGCAGucCa -3'
miRNA:   3'- -CUGCGu--GUGGAAGAG-GU--CCGUCuuGc -5'
30197 3' -54.4 NC_006273.1 + 18468 0.67 0.968419
Target:  5'- -cCGCACGCCgggUCgcaCCgAGGUGGAGCc -3'
miRNA:   3'- cuGCGUGUGGa--AGa--GG-UCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 80910 0.68 0.927605
Target:  5'- uGAUGCGCGCCaagUUCU-GGCGGAACc -3'
miRNA:   3'- -CUGCGUGUGGaa-GAGGuCCGUCUUGc -5'
30197 3' -54.4 NC_006273.1 + 122798 0.71 0.840778
Target:  5'- cGGCGCACugCgccagCCAGGUAGAAg- -3'
miRNA:   3'- -CUGCGUGugGaaga-GGUCCGUCUUgc -5'
30197 3' -54.4 NC_006273.1 + 170555 0.66 0.976526
Target:  5'- -gUGCACgguccggccgaACCgcgaCUCCAGGCGGcGCGg -3'
miRNA:   3'- cuGCGUG-----------UGGaa--GAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 39908 0.7 0.8785
Target:  5'- aGCGCGCACC--CUCUAGGUGG-ACGc -3'
miRNA:   3'- cUGCGUGUGGaaGAGGUCCGUCuUGC- -5'
30197 3' -54.4 NC_006273.1 + 64717 0.67 0.968119
Target:  5'- -gUGCGCAUCUUCUCCaccaaccAGGguGggUu -3'
miRNA:   3'- cuGCGUGUGGAAGAGG-------UCCguCuuGc -5'
30197 3' -54.4 NC_006273.1 + 170987 0.66 0.976526
Target:  5'- aGCGCGCACCcaggacCUCC-GGUAcGGACGu -3'
miRNA:   3'- cUGCGUGUGGaa----GAGGuCCGU-CUUGC- -5'
30197 3' -54.4 NC_006273.1 + 105861 0.66 0.981006
Target:  5'- cGGCGCAgCGCCggccaUUCUCCGGGUcGcGCu -3'
miRNA:   3'- -CUGCGU-GUGG-----AAGAGGUCCGuCuUGc -5'
30197 3' -54.4 NC_006273.1 + 104934 0.7 0.8785
Target:  5'- gGugGCACACCgUCUgcUCGGGCA-AGCGa -3'
miRNA:   3'- -CugCGUGUGGaAGA--GGUCCGUcUUGC- -5'
30197 3' -54.4 NC_006273.1 + 2139 0.67 0.968419
Target:  5'- gGACGCGCACgCgguggUCgGGGCGGAcGCGa -3'
miRNA:   3'- -CUGCGUGUG-Gaag--AGgUCCGUCU-UGC- -5'
30197 3' -54.4 NC_006273.1 + 231091 0.68 0.932708
Target:  5'- uGAUGCGCACCUUCggC-GGUaugaAGAACGa -3'
miRNA:   3'- -CUGCGUGUGGAAGagGuCCG----UCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.