miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 129763 0.66 0.990728
Target:  5'- aCCGaacCCGAGCGUGUCAagcuGGUACugGg -3'
miRNA:   3'- cGGC---GGCUUGCAUGGUgu--CCAUGugC- -5'
30197 5' -54 NC_006273.1 + 82596 0.66 0.990728
Target:  5'- -gCGCCaGAGCGUGCaaACGGGcgUGCugGg -3'
miRNA:   3'- cgGCGG-CUUGCAUGg-UGUCC--AUGugC- -5'
30197 5' -54 NC_006273.1 + 208801 0.66 0.990728
Target:  5'- -aCGCCGAugGgcgcugugGCgCACAGGUugAg- -3'
miRNA:   3'- cgGCGGCUugCa-------UG-GUGUCCAugUgc -5'
30197 5' -54 NC_006273.1 + 184583 0.66 0.99061
Target:  5'- cGCgGCCGAuauagaaguaguuGCGUugaaaACCGC-GGUACAUc -3'
miRNA:   3'- -CGgCGGCU-------------UGCA-----UGGUGuCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 155470 0.66 0.989494
Target:  5'- uGUCGCCGGcgcagACGUACaCGCucgaGGGcUACACc -3'
miRNA:   3'- -CGGCGGCU-----UGCAUG-GUG----UCC-AUGUGc -5'
30197 5' -54 NC_006273.1 + 47015 0.66 0.989494
Target:  5'- cGCCGCCcgacuuGGAUG-ACCGCGGuGUuuCACGu -3'
miRNA:   3'- -CGGCGG------CUUGCaUGGUGUC-CAu-GUGC- -5'
30197 5' -54 NC_006273.1 + 173523 0.66 0.989494
Target:  5'- aCUGCuCGGcgGCGUACaGCGGGUcGCGCGc -3'
miRNA:   3'- cGGCG-GCU--UGCAUGgUGUCCA-UGUGC- -5'
30197 5' -54 NC_006273.1 + 37891 0.66 0.989494
Target:  5'- uGgCGCCGGGCcu-CgCGCAGGUcucGCACGc -3'
miRNA:   3'- -CgGCGGCUUGcauG-GUGUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 229541 0.66 0.989494
Target:  5'- -aUGaCCGGACGUGCUugGacuGGUACAUa -3'
miRNA:   3'- cgGC-GGCUUGCAUGGugU---CCAUGUGc -5'
30197 5' -54 NC_006273.1 + 112253 0.66 0.989494
Target:  5'- uGgCGCgaGGACGUGCuCAUggaccGGGUGCGCa -3'
miRNA:   3'- -CgGCGg-CUUGCAUG-GUG-----UCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 155438 0.66 0.989494
Target:  5'- aCCGCCGc-CGUGCC-CGGcG-ACGCGg -3'
miRNA:   3'- cGGCGGCuuGCAUGGuGUC-CaUGUGC- -5'
30197 5' -54 NC_006273.1 + 97370 0.66 0.989494
Target:  5'- cGCCGCCuAGCGUcacuGCCuucugACAGGUcagguccaugGCACc -3'
miRNA:   3'- -CGGCGGcUUGCA----UGG-----UGUCCA----------UGUGc -5'
30197 5' -54 NC_006273.1 + 94474 0.66 0.989494
Target:  5'- aCUGuaGAGCGcGCacaacaaACAGGUGCGCGa -3'
miRNA:   3'- cGGCggCUUGCaUGg------UGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 39712 0.66 0.989494
Target:  5'- uCCGUCGuccgUGUGCCACGGcagACACGc -3'
miRNA:   3'- cGGCGGCuu--GCAUGGUGUCca-UGUGC- -5'
30197 5' -54 NC_006273.1 + 234604 0.66 0.989494
Target:  5'- uCCGUCGuccgUGUGCCACGGcagACACGc -3'
miRNA:   3'- cGGCGGCuu--GCAUGGUGUCca-UGUGC- -5'
30197 5' -54 NC_006273.1 + 209683 0.66 0.989494
Target:  5'- cGCgGCCGAgaugaccaACGUACCGucCAGGcagagACAUa -3'
miRNA:   3'- -CGgCGGCU--------UGCAUGGU--GUCCa----UGUGc -5'
30197 5' -54 NC_006273.1 + 147697 0.66 0.989494
Target:  5'- cGCCGCUGAccacCGccACCACccGUACACc -3'
miRNA:   3'- -CGGCGGCUu---GCa-UGGUGucCAUGUGc -5'
30197 5' -54 NC_006273.1 + 230279 0.66 0.989494
Target:  5'- uGCCGuucacuuuuCCGuuuuACGUGCCGC-GGUccuaGCACGu -3'
miRNA:   3'- -CGGC---------GGCu---UGCAUGGUGuCCA----UGUGC- -5'
30197 5' -54 NC_006273.1 + 41557 0.66 0.989494
Target:  5'- cGgCGCCGAACGUcaACguCGGuugcucgaacuuGUACGCGg -3'
miRNA:   3'- -CgGCGGCUUGCA--UGguGUC------------CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 84862 0.66 0.989494
Target:  5'- gGCCGUCaGggUGgagggcuugGCCACGGGagcuguugGCACGu -3'
miRNA:   3'- -CGGCGG-CuuGCa--------UGGUGUCCa-------UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.